style-repo:update the strutures of the repo

Author: feiranl

.DS_Store

@@ -0,0 +1,246 @@
+s_0003[e]	(1->3)-beta-D-glucan [extracellular]
+s_0022[e]	(R)-carnitine [extracellular]
+s_0026[e]	(R)-lactate [extracellular]
+s_0029[e]	(R)-mevalonate [extracellular]
+s_0032[e]	(R)-pantothenate [extracellular]
+s_0036[e]	(R,R)-2,3-butanediol [extracellular]
+s_0058[e]	(S)-3-methyl-2-oxopentanoate [extracellular]
+s_0064[e]	(S)-lactate [extracellular]
+s_0067[e]	(S)-malate [extracellular]
+s_0080[e]	1-(sn-glycero-3-phospho)-1D-myo-inositol [extracellular]
+s_0084[e]	1-acylglycerophosphocholine [extracellular]
+s_0133[e]	2'-deoxyadenosine [extracellular]
+s_0135[e]	2'-deoxyguanosine [extracellular]
+s_0137[e]	2'-deoxyinosine [extracellular]
+s_0139[e]	2'-deoxyuridine [extracellular]
+s_0163[e]	2-isopropylmalate [extracellular]
+s_0167[e]	2-methylbutanal [extracellular]
+s_0170[e]	2-methylbutanol [extracellular]
+s_0173[e]	2-methylbutyl acetate [extracellular]
+s_0181[e]	2-oxoglutarate [extracellular]
+s_0186[e]	2-phenylethanol [extracellular]
+s_0235[e]	3-methylbutanal [extracellular]
+s_0272[e]	4-aminobenzoate [extracellular]
+s_0316[e]	5-aminolevulinate [extracellular]
+s_0320[e]	5-formyltetrahydrofolic acid [extracellular]
+s_0342[e]	7,8-diaminononanoate [extracellular]
+s_0354[e]	8-amino-7-oxononanoate [extracellular]
+s_0358[e]	9H-xanthine [extracellular]
+s_0360[e]	acetaldehyde [extracellular]
+s_0364[e]	acetate [extracellular]
+s_0384[e]	adenine [extracellular]
+s_0391[e]	adenosine 3',5'-bismonophosphate [extracellular]
+s_0387[e]	adenosine [extracellular]
+s_0406[e]	allantoate [extracellular]
+s_0408[e]	allantoin [extracellular]
+s_1521[e]	trehalose [extracellular]
+s_0413[e]	alpha-D-glucosamine 6-phosphate [extracellular]
+s_0420[e]	ammonium [extracellular]
+s_0446[e]	bicarbonate [extracellular]
+s_0452[e]	biotin [extracellular]
+s_0458[e]	carbon dioxide [extracellular]
+s_0513[e]	choline [extracellular]
+s_0523[e]	citrate [extracellular]
+s_0544[e]	cytidine [extracellular]
+s_0546[e]	cytosine [extracellular]
+s_0549[e]	D-arabinose [extracellular]
+s_0554[e]	D-fructose [extracellular]
+s_0559[e]	D-galactose [extracellular]
+s_0560[e]	D-galacturonate [extracellular]
+s_0562[e]	D-glucitol [extracellular]
+s_0565[e]	D-glucose [extracellular]
+s_0572[e]	D-mannose [extracellular]
+s_0576[e]	D-ribose [extracellular]
+s_0579[e]	D-xylose [extracellular]
+s_0597[e]	decanoate [extracellular]
+s_0611[e]	deoxycytidine [extracellular]
+s_0651[e]	dTTP [extracellular]
+s_0659[e]	episterol [extracellular]
+s_0668[e]	ergosterol [extracellular]
+s_0681[e]	ethanol [extracellular]
+s_0684[e]	ethanolamine [extracellular]
+s_0686[e]	ethyl acetate [extracellular]
+s_0702[e]	fecosterol [extracellular]
+s_0715[e]	FMN [extracellular]
+s_0720[e]	folate [extracellular]
+s_0723[e]	formate [extracellular]
+s_0726[e]	fumarate [extracellular]
+s_0736[e]	gamma-aminobutyrate [extracellular]
+s_0755[e]	glutathione disulfide [extracellular]
+s_0751[e]	glutathione [extracellular]
+s_0766[e]	glycerol [extracellular]
+s_1004[e]	L-glycine [extracellular]
+s_0776[e]	glycolaldehyde [extracellular]
+s_0780[e]	glyoxylate [extracellular]
+s_0788[e]	guanine [extracellular]
+s_0791[e]	guanosine [extracellular]
+s_0796[e]	H+ [extracellular]
+s_0826[e]	hexadecanal [extracellular]
+s_0844[e]	hypoxanthine [extracellular]
+s_0851[e]	indol-3-ylacetaldehyde [extracellular]
+s_0857[e]	inosine [extracellular]
+s_0925[e]	iron(2+) [extracellular]
+s_0928[e]	isoamyl acetate [extracellular]
+s_0930[e]	isoamylol [extracellular]
+s_0933[e]	isobutanol [extracellular]
+s_0936[e]	isobutyl acetate [extracellular]
+s_0938[e]	isobutyraldehyde [extracellular]
+s_0956[e]	L-alanine [extracellular]
+s_0962[e]	L-arabinitol [extracellular]
+s_0964[e]	L-arabinose [extracellular]
+s_0966[e]	L-arginine [extracellular]
+s_0970[e]	L-asparagine [extracellular]
+s_0974[e]	L-aspartate [extracellular]
+s_0982[e]	L-cysteine [extracellular]
+s_0990[e]	L-glucitol [extracellular]
+s_0992[e]	L-glutamate [extracellular]
+s_1000[e]	L-glutamine [extracellular]
+s_1007[e]	L-histidine [extracellular]
+s_1015[e]	L-homoserine [extracellular]
+s_1017[e]	L-isoleucine [extracellular]
+s_1022[e]	L-leucine [extracellular]
+s_1026[e]	L-lysine [extracellular]
+s_1030[e]	L-methionine [extracellular]
+s_1033[e]	L-phenylalanine [extracellular]
+s_1036[e]	L-proline [extracellular]
+s_1041[e]	L-serine [extracellular]
+s_1044[e]	L-sorbose [extracellular]
+s_1046[e]	L-threonine [extracellular]
+s_1049[e]	L-tryptophan [extracellular]
+s_1052[e]	L-tyrosine [extracellular]
+s_1057[e]	L-valine [extracellular]
+s_1061[e]	lanosterol [extracellular]
+s_1067[e]	laurate [extracellular]
+s_1106[e]	maltose [extracellular]
+s_1154[e]	myo-inositol [extracellular]
+s_1186[e]	N,N'-diformyldityrosine [extracellular]
+s_1220[e]	nicotinate [extracellular]
+s_1225[e]	NMN [extracellular]
+s_1250[e]	octanoate [extracellular]
+s_1267[e]	ornithine [extracellular]
+s_1272[e]	oxaloacetate [extracellular]
+s_1277[e]	oxygen [extracellular]
+s_1288[e]	palmitate [extracellular]
+s_1295[e]	palmitoleate [extracellular]
+s_1309[e]	pectin [extracellular]
+s_1317[e]	phenethyl acetate [extracellular]
+s_1319[e]	phenylacetaldehyde [extracellular]
+s_1324[e]	phosphate [extracellular]
+s_1374[e]	potassium [extracellular]
+s_1390[e]	putrescine [extracellular]
+s_1397[e]	pyridoxine [extracellular]
+s_1400[e]	pyruvate [extracellular]
+s_1406[e]	riboflavin [extracellular]
+s_1418[e]	S-adenosyl-L-methionine [extracellular]
+s_1425[e]	S-methyl-L-methionine [extracellular]
+s_1435[e]	sn-glycero-3-phosphocholine [extracellular]
+s_1438[e]	sodium [extracellular]
+s_1440[e]	spermidine [extracellular]
+s_1443[e]	spermine [extracellular]
+s_1450[e]	stearate [extracellular]
+s_1459[e]	succinate [extracellular]
+s_1466[e]	sucrose [extracellular]
+s_1468[e]	sulphate [extracellular]
+s_1470[e]	sulphite [extracellular]
+s_1472[e]	taurine [extracellular]
+s_1476[e]	TDP [extracellular]
+s_1490[e]	thiamine [extracellular]
+s_1498[e]	TMP [extracellular]
+s_1494[e]	thymidine [extracellular]
+s_1530[e]	tryptophol [extracellular]
+s_1551[e]	uracil [extracellular]
+s_1553[e]	urea [extracellular]
+s_1557[e]	uridine [extracellular]
+s_0805[e]	H2O [extracellular]
+s_1564[e]	xanthosine [extracellular]
+s_1567[e]	xylitol [extracellular]
+s_1571[e]	zymosterol [extracellular]
+s_0450[c]	biomass [cytoplasm]
+s_2766[e]	14-demethyllanosterol [extracellular]
+s_2768[e]	ergosta-5,7,22,24(28)-tetraen-3beta-ol [extracellular]
+s_2822[e]	butyrate [extracellular]
+s_2824[e]	hexanoate [extracellular]
+s_2826[e]	oleate [extracellular]
+s_1163[e]	myristate [extracellular]
+s_3715[e]	raffinose [extracellular]
+s_3716[e]	melibiose [extracellular]
+s_3746[c]	lipid backbone [cytoplasm]
+s_3747[c]	lipid chain [cytoplasm]
+s_4074[e]	cysteamine [extracellular]
+s_4124[e]	methanol [extracellular]
+s_4170[e]	Ala-Gly [extracellular]
+s_4137[e]	3-oxalomalate(3-) [extracellular]
+s_4109[e]	6-O-alpha-D-glucopyranosyl-D-fructofuranose [extracellular]
+s_4118[e]	5-dehydro-D-gluconate [extracellular]
+s_4130[e]	D-tagatose [extracellular]
+s_4131[e]	turanose [extracellular]
+s_4150[e]	D-glucose 6-phosphate [extracellular]
+s_4140[e]	alpha-maltotriose [extracellular]
+s_4145[e]	D-glucose 1-phosphate [extracellular]
+s_4125[e]	methyl alpha-D-glucopyranoside [extracellular]
+s_4164[e]	D-Glucosamine [extracellular]
+s_4167[e]	glycerone [extracellular]
+s_4034[e]	Ala-Gln [extracellular]
+s_4168[e]	Ala-Leu [extracellular]
+s_4056[e]	Gly-Gln [extracellular]
+s_4050[e]	Ala-His [extracellular]
+s_4053[e]	Gly-Asn [extracellular]
+s_4037[e]	Ala-Glu [extracellular]
+s_4085[e]	Gly-Met [extracellular]
+s_4119[e]	Ala-Asp [extracellular]
+s_4059[e]	Gly-Glu [extracellular]
+s_4040[e]	Ala-Thr [extracellular]
+s_4143[e]	Met-Ala [extracellular]
+s_4166[e]	L-citrulline [extracellular]
+s_4080[e]	2-aminobutanoate [extracellular]
+s_4158[e]	choline phosphate [extracellular]
+s_4049[e]	glycerol 1-phosphate [extracellular]
+s_4141[e]	2-phospho-D-glyceric acid [extracellular]
+s_4148[e]	GMP [extracellular]
+s_4147[e]	3-phospho-serine [extracellular]
+s_4078[e]	O-phosphonatooxy-D-serine(2-) [extracellular]
+s_4157[e]	diphosphate [extracellular]
+s_4099[e]	triphosphate [extracellular]
+s_4152[e]	phosphoenolpyruvate [extracellular]
+s_4093[e]	N(omega)-phospho-L-arginine [extracellular]
+s_4146[e]	carbamoyl phosphate [extracellular]
+s_4154[e]	O-phosphoethanolamine [extracellular]
+s_4075[e]	cysteamine S-phosphate [extracellular]
+s_4067[e]	guanosine 2'-monophosphate [extracellular]
+s_4063[e]	glycerol 2-phosphate(2-) [extracellular]
+s_4069[e]	3'-GMP [extracellular]
+s_4070[e]	2-phosphoglycolate [extracellular]
+s_4155[e]	6-phospho-D-gluconate [extracellular]
+s_4153[e]	D-mannose 6-phosphate [extracellular]
+s_4095[e]	2',3'-cyclic GMP [extracellular]
+s_4097[e]	O(4)-phospho-L-tyrosine [extracellular]
+s_4065[e]	O-phospho-L-threonine [extracellular]
+s_4142[e]	3-phosphonato-D-glycerate(3-) [extracellular]
+s_4162[e]	adenosine 2'-phosphate [extracellular]
+s_4107[e]	3'-AMP [extracellular]
+s_4161[e]	2',3'-cyclic AMP [extracellular]
+s_4156[e]	D-mannose 1-phosphate [extracellular]
+s_4160[e]	AMP [extracellular]
+s_4135[e]	N(alpha)-acetyl-L-methionine [extracellular]
+s_4176[e]	L-Methionine S-oxide [extracellular]
+s_4105[e]	3-sulfino-L-alanine [extracellular]
+s_4111[e]	N-acetyl-L-cysteine [extracellular]
+s_4139[e]	L-cysteate [extracellular]
+s_4116[e]	2-hydroxyethane-1-sulfonate [extracellular]
+s_4133[e]	acetoacetate [extracellular]
+s_4172[e]	N-acetyl-L-glutamate [extracellular]
+s_4151[e]	UMP [extracellular]
+s_4163[e]	CMP [extracellular]
+s_4047[e]	thymidine 5'-monophosphate [extracellular]
+s_4045[e]	thymidine 3'-monophosphate [extracellular]
+s_4101[e]	cytidine 2'-phosphate [extracellular]
+s_4082[e]	uridine 2'-phosphate [extracellular]
+s_4084[e]	3'-UMP [extracellular]
+s_4127[e]	2',3'-cyclic CMP [extracellular]
+s_4103[e]	2',3'-cyclic UMP [extracellular]
+s_4200[e]	chloride [extracellular]
+s_4201[e]	Cu2(+) [extracellular]
+s_4202[e]	Mn(2+) [extracellular]
+s_4203[e]	Zn(2+) [extracellular]
+s_4204[e]	Mg(2+) [extracellular]
+s_4199[e]	Ca(2+) [extracellular]

LICENSE.md

@@ -0,0 +1,7 @@
+MATLAB	9.1.0.441655 (R2016b)
+libSBML	5.17.0
+RAVEN_toolbox	2.1.0
+COBRA_toolbox	3.0.3
+SBML_level	3
+SBML_version	1
+fbc_version	2