ci.yml

name: CI

permissions:
  actions: write
  checks: write
  contents: write
  deployments: write
  issues: write
  pull-requests: write
  statuses: write

on:
  push:
    branches:
      - main
    tags:
      - "v*"
  pull_request: {}
  workflow_dispatch:

jobs:
  test_ubuntu:
    name: Test on Ubuntu
    runs-on: ubuntu-latest

    steps:
      - name: Cancel Previous Runs
        uses: styfle/cancel-workflow-action@0.12.1
        with:
          access_token: ${{ secrets.GITHUB_TOKEN }}

      - name: Checkout Code
        uses: actions/checkout@v4

      - name: Set up Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          miniconda-version: "latest"
          python-version: "3.10.12"
          auto-update-conda: true
          use-mamba: true

      - name: Initialize Conda
        shell: bash -l {0}
        run: |
          conda init bash
          source ~/.bashrc
          conda create -n residem python=3.10 -y
          source ~/.bashrc

      - name: Force install dependencies
        continue-on-error: true
        run: |
          source ~/.bashrc
          conda activate residem
          full_path=$(which python)
          base_path=$(dirname $(dirname "$full_path"))
          echo $base_path
          conda env update --prefix $base_path --file environment.yml --prune
          conda install pytest pytest-cov -y

      - name: Install residem with Flit
        shell: bash -l {0}
        run: |
          source ~/.bashrc
          conda activate residem
          flit install --deps all --symlink

      - name: Test
        run: |
          source ~/.bashrc
          conda activate residem
          pytest --color=yes --cov=. --cov-report=xml --cov-report=term-missing --ignore=docs/

      - name: Coverage
        uses: codecov/codecov-action@v4

  test_macos:
    name: Test on macOS
    runs-on: macos-latest

    steps:
      - name: Cancel Previous Runs
        uses: styfle/cancel-workflow-action@0.12.1
        with:
          access_token: ${{ secrets.GITHUB_TOKEN }}

      - name: Checkout Code
        uses: actions/checkout@v4

      - name: Set up Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          miniconda-version: "latest"
          python-version: "3.10.12"
          auto-update-conda: true
          use-mamba: true

      - name: Initialize Conda
        shell: bash -l {0}
        run: |
          conda init bash
          source ~/.bash_profile
          conda create -n residem python=3.10 -y
          source ~/.bash_profile

      - name: Force install dependencies
        continue-on-error: true
        run: |
          source ~/.bash_profile
          conda activate residem
          full_path=$(which python)
          base_path=$(dirname $(dirname "$full_path"))
          echo $base_path
          conda env update --prefix $base_path --file environment.yml --prune
          conda install pytest pytest-cov -y

      - name: Install residem with Flit
        shell: bash -l {0}
        run: |
          source ~/.bash_profile
          conda activate residem
          flit install --deps all --symlink

      - name: Test
        run: |
          source ~/.bash_profile
          conda activate residem
          pytest --color=yes --cov=. --cov-report=xml --cov-report=term-missing --ignore=docs/

      - name: Coverage
        uses: codecov/codecov-action@v4

  deploy:
    name: Deploy
    needs: [test_ubuntu, test_macos]
    if: "success() && startsWith(github.ref, 'refs/tags/')"
    runs-on: ubuntu-latest

    outputs:
      deployment_status: ${{ steps.deployment_status.outcome }}

    steps:
      - name: Checkout Code
        uses: actions/checkout@v4

      - name: Set up Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          miniconda-version: "latest"
          python-version: "3.10.12"
          auto-update-conda: true
          use-mamba: true

      - name: Initialize Conda
        shell: bash -l {0}
        run: |
          conda init bash
          source ~/.bashrc

      - name: Install Flit
        run: |
          source ~/.bashrc
          conda activate residem
          pip install flit

      - name: Build and publish
        run: |
          source ~/.bashrc
          conda activate residem
          flit build
          flit publish
        env:
          FLIT_USERNAME: __token__
          FLIT_PASSWORD: ${{ secrets.PYPI_API_KEY }}

      - name: Create GitHub Release
        id: deployment_status
        uses: softprops/action-gh-release@v2
        with:
          generate_release_notes: true