Include spatialindex headers (#292)

* Add spatialindex headerfiles to package
* Avoid packaging header data for sdist
* Enable install.finalize_options to copy lib and include to wheel
* Rewrite parts of finder to use Pathlib; add get_include() and tests

---------

Co-authored-by: Mike Taves <[email protected]>

Author: JDBetteridge

ci/install_libspatialindex.bash

@@ -7,7 +7,7 @@ SHA256=63a03bfb26aa65cf0159f925f6c3491b6ef79bc0e3db5a631d96772d6541187e
 
 # where to copy resulting files
 # this has to be run before `cd`-ing anywhere
-gentarget() {
+libtarget() {
   OURPWD=$PWD
   cd "$(dirname "$0")"
   mkdir -p ../rtree/lib
@@ -17,6 +17,16 @@ gentarget() {
   echo $arr
 }
 
+headertarget() {
+  OURPWD=$PWD
+  cd "$(dirname "$0")"
+  mkdir -p ../rtree/include
+  cd ../rtree/include
+  arr=$(pwd)
+  cd "$OURPWD"
+  echo $arr
+}
+
 scriptloc() {
   OURPWD=$PWD
   cd "$(dirname "$0")"
@@ -26,7 +36,8 @@ scriptloc() {
 }
 # note that we're doing this convoluted thing to get
 # an absolute path so mac doesn't yell at us
-TARGET=`gentarget`
+LIBTARGET=`libtarget`
+HEADERTARGET=`headertarget`
 SL=`scriptloc`
 
 rm $VERSION.zip || true
@@ -60,10 +71,13 @@ if [ "$(uname)" == "Darwin" ]; then
     # change the rpath in the dylib to point to the same directory
     install_name_tool -change @rpath/libspatialindex.6.dylib @loader_path/libspatialindex.dylib bin/libspatialindex_c.dylib
     # copy the dylib files to the target director
-    cp bin/libspatialindex.dylib $TARGET
-    cp bin/libspatialindex_c.dylib $TARGET
+    cp bin/libspatialindex.dylib $LIBTARGET
+    cp bin/libspatialindex_c.dylib $LIBTARGET
+    cp -r ../include/* $HEADERTARGET
 else
-    cp -d bin/* $TARGET
+    cp -L bin/* $LIBTARGET
+    cp -r ../include/* $HEADERTARGET
 fi
 
-ls $TARGET
+ls $LIBTARGET
+ls -R $HEADERTARGET

ci/install_libspatialindex.bat

@@ -21,7 +21,9 @@ ninja
 
 mkdir %~dp0\..\rtree\lib
 copy bin\*.dll %~dp0\..\rtree\lib
+xcopy /S ..\include\* %~dp0\..\rtree\include\
 rmdir /Q /S bin
 
 dir %~dp0\..\rtree\
 dir %~dp0\..\rtree\lib
+dir %~dp0\..\rtree\include

pyproject.toml

@@ -39,12 +39,13 @@ Repository = "https://github.com/Toblerity/rtree"
 [tool.setuptools]
 packages = ["rtree"]
 zip-safe = false
+include-package-data = false
 
 [tool.setuptools.dynamic]
 version = {attr = "rtree.__version__"}
 
 [tool.setuptools.package-data]
-rtree = ["lib", "py.typed"]
+rtree = ["py.typed"]
 
 [tool.black]
 target-version = ["py38", "py39", "py310", "py311", "py312"]

rtree/finder.py

@@ -7,22 +7,22 @@
 from __future__ import annotations
 
 import ctypes
+import importlib.metadata
 import os
 import platform
 import sys
 from ctypes.util import find_library
+from pathlib import Path
 
-# the current working directory of this file
-_cwd = os.path.abspath(os.path.expanduser(os.path.dirname(__file__)))
+_cwd = Path(__file__).parent
+_sys_prefix = Path(sys.prefix)
 
 # generate a bunch of candidate locations where the
 # libspatialindex shared library *might* be hanging out
-_candidates = [
-    os.environ.get("SPATIALINDEX_C_LIBRARY", None),
-    os.path.join(_cwd, "lib"),
-    _cwd,
-    "",
-]
+_candidates = []
+if "SPATIALINDEX_C_LIBRARY" in os.environ:
+    _candidates.append(Path(os.environ["SPATIALINDEX_C_LIBRARY"]))
+_candidates += [_cwd / "lib", _cwd, Path("")]
 
 
 def load() -> ctypes.CDLL:
@@ -39,29 +39,26 @@ def load() -> ctypes.CDLL:
         lib_name = f"spatialindex_c-{arch}.dll"
 
         # add search paths for conda installs
-        if (
-            os.path.exists(os.path.join(sys.prefix, "conda-meta"))
-            or "conda" in sys.version
-        ):
-            _candidates.append(os.path.join(sys.prefix, "Library", "bin"))
+        if (_sys_prefix / "conda-meta").exists() or "conda" in sys.version:
+            _candidates.append(_sys_prefix / "Library" / "bin")
 
         # get the current PATH
         oldenv = os.environ.get("PATH", "").strip().rstrip(";")
         # run through our list of candidate locations
         for path in _candidates:
-            if not path or not os.path.exists(path):
+            if not path.exists():
                 continue
             # temporarily add the path to the PATH environment variable
             # so Windows can find additional DLL dependencies.
-            os.environ["PATH"] = ";".join([path, oldenv])
+            os.environ["PATH"] = ";".join([str(path), oldenv])
             try:
-                rt = ctypes.cdll.LoadLibrary(os.path.join(path, lib_name))
+                rt = ctypes.cdll.LoadLibrary(str(path / lib_name))
                 if rt is not None:
                     return rt
             except OSError:
                 pass
-            except BaseException as E:
-                print(f"rtree.finder unexpected error: {E!s}")
+            except BaseException as err:
+                print(f"rtree.finder unexpected error: {err!s}", file=sys.stderr)
             finally:
                 os.environ["PATH"] = oldenv
         raise OSError(f"could not find or load {lib_name}")
@@ -73,8 +70,6 @@ def load() -> ctypes.CDLL:
             # macos shared libraries are `.dylib`
             lib_name = "libspatialindex_c.dylib"
         else:
-            import importlib.metadata
-
             # linux shared libraries are `.so`
             lib_name = "libspatialindex_c.so"
 
@@ -88,49 +83,91 @@ def load() -> ctypes.CDLL:
                             and file.stem.startswith("libspatialindex")
                             and ".so" in file.suffixes
                         ):
-                            _candidates.insert(1, os.path.join(str(file.locate())))
+                            _candidates.insert(1, Path(file.locate()))
                             break
             except importlib.metadata.PackageNotFoundError:
                 pass
 
         # get the starting working directory
         cwd = os.getcwd()
         for cand in _candidates:
-            if cand is None:
-                continue
-            elif os.path.isdir(cand):
+            if cand.is_dir():
                 # if our candidate is a directory use best guess
                 path = cand
-                target = os.path.join(cand, lib_name)
-            elif os.path.isfile(cand):
+                target = cand / lib_name
+            elif cand.is_file():
                 # if candidate is just a file use that
-                path = os.path.split(cand)[0]
+                path = cand.parent
                 target = cand
             else:
                 continue
 
-            if not os.path.exists(target):
+            if not target.exists():
                 continue
 
             try:
                 # move to the location we're checking
                 os.chdir(path)
                 # try loading the target file candidate
-                rt = ctypes.cdll.LoadLibrary(target)
+                rt = ctypes.cdll.LoadLibrary(str(target))
                 if rt is not None:
                     return rt
-            except BaseException as E:
-                print(f"rtree.finder ({target}) unexpected error: {E!s}")
+            except BaseException as err:
+                print(
+                    f"rtree.finder ({target}) unexpected error: {err!s}",
+                    file=sys.stderr,
+                )
             finally:
                 os.chdir(cwd)
 
     try:
         # try loading library using LD path search
-        path = find_library("spatialindex_c")
-        if path is not None:
-            return ctypes.cdll.LoadLibrary(path)
+        pth = find_library("spatialindex_c")
+        if pth is not None:
+            return ctypes.cdll.LoadLibrary(pth)
 
     except BaseException:
         pass
 
     raise OSError("Could not load libspatialindex_c library")
+
+
+def get_include() -> str:
+    """Return the directory that contains the spatialindex \\*.h files.
+
+    :returns: Path to include directory or "" if not found.
+    """
+    # check if was bundled with a binary wheel
+    try:
+        pkg_files = importlib.metadata.files("rtree")
+        if pkg_files is not None:
+            for path in pkg_files:  # type: ignore
+                if path.name == "SpatialIndex.h":
+                    return str(Path(path.locate()).parent.parent)
+    except importlib.metadata.PackageNotFoundError:
+        pass
+
+    # look for this header file in a few directories
+    path_to_spatialindex_h = Path("include/spatialindex/SpatialIndex.h")
+
+    # check sys.prefix, e.g. conda's libspatialindex package
+    if os.name == "nt":
+        file = _sys_prefix / "Library" / path_to_spatialindex_h
+    else:
+        file = _sys_prefix / path_to_spatialindex_h
+    if file.is_file():
+        return str(file.parent.parent)
+
+    # check if relative to lib
+    libdir = Path(load()._name).parent
+    file = libdir.parent / path_to_spatialindex_h
+    if file.is_file():
+        return str(file.parent.parent)
+
+    # check system install
+    file = Path("/usr") / path_to_spatialindex_h
+    if file.is_file():
+        return str(file.parent.parent)
+
+    # not found
+    return ""

setup.py

@@ -1,13 +1,14 @@
 #!/usr/bin/env python3
-import os
+import sys
+from pathlib import Path
 
 from setuptools import setup
 from setuptools.command.install import install
 from setuptools.dist import Distribution
 from wheel.bdist_wheel import bdist_wheel as _bdist_wheel
 
 # current working directory of this setup.py file
-_cwd = os.path.abspath(os.path.split(__file__)[0])
+_cwd = Path(__file__).resolve().parent
 
 
 class bdist_wheel(_bdist_wheel):  # type: ignore[misc]
@@ -26,54 +27,54 @@ def has_ext_modules(foo) -> bool:
 class InstallPlatlib(install):  # type: ignore[misc]
     def finalize_options(self) -> None:
         """
-        Copy the shared libraries into the wheel. Note that this
-        will *only* check in `rtree/lib` rather than anywhere on
-        the system so if you are building a wheel you *must* copy or
-        symlink the `.so`/`.dll`/`.dylib` files into `rtree/lib`.
+        Copy the shared libraries and header files into the wheel. Note that
+        this will *only* check in `rtree/lib` and `include` rather than
+        anywhere on the system so if you are building a wheel you *must* copy
+        or symlink the `.so`/`.dll`/`.dylib` files into `rtree/lib` and
+        `.h` into `rtree/include`.
         """
-        # use for checking extension types
-        from fnmatch import fnmatch
-
         install.finalize_options(self)
         if self.distribution.has_ext_modules():
             self.install_lib = self.install_platlib
-        # now copy over libspatialindex
-        # get the location of the shared library on the filesystem
-
-        # where we're putting the shared library in the build directory
-        target_dir = os.path.join(self.build_lib, "rtree", "lib")
-        # where are we checking for shared libraries
-        source_dir = os.path.join(_cwd, "rtree", "lib")
-
-        # what patterns represent shared libraries
-        patterns = {"*.so", "libspatialindex*dylib", "*.dll"}
-
-        if not os.path.isdir(source_dir):
-            # no copying of binary parts to library
-            # this is so `pip install .` works even
-            # if `rtree/lib` isn't populated
-            return
-
-        for file_name in os.listdir(source_dir):
-            # make sure file name is lower case
-            check = file_name.lower()
-            # use filename pattern matching to see if it is
-            # a shared library format file
-            if not any(fnmatch(check, p) for p in patterns):
-                continue
-
-            # if the source isn't a file skip it
-            if not os.path.isfile(os.path.join(source_dir, file_name)):
-                continue
-
-            # make build directory if it doesn't exist yet
-            if not os.path.isdir(target_dir):
-                os.makedirs(target_dir)
-
-            # copy the source file to the target directory
-            self.copy_file(
-                os.path.join(source_dir, file_name), os.path.join(target_dir, file_name)
-            )
+
+        # source files to copy
+        source_dir = _cwd / "rtree"
+
+        # destination for the files in the build directory
+        target_dir = Path(self.build_lib) / "rtree"
+
+        source_lib = source_dir / "lib"
+        target_lib = target_dir / "lib"
+        if source_lib.is_dir():
+            # what patterns represent shared libraries for supported platforms
+            if sys.platform.startswith("win"):
+                lib_pattern = "*.dll"
+            elif sys.platform.startswith("linux"):
+                lib_pattern = "*.so*"
+            elif sys.platform == "darwin":
+                lib_pattern = "libspatialindex*dylib"
+            else:
+                raise ValueError(f"unhandled platform {sys.platform!r}")
+
+            target_lib.mkdir(parents=True, exist_ok=True)
+            for pth in source_lib.glob(lib_pattern):
+                # if the source isn't a file skip it
+                if not pth.is_file():
+                    continue
+
+                # copy the source file to the target directory
+                self.copy_file(str(pth), str(target_lib / pth.name))
+
+        source_include = source_dir / "include"
+        target_include = target_dir / "include"
+        if source_include.is_dir():
+            for pth in source_include.rglob("*.h"):
+                rpth = pth.relative_to(source_include)
+
+                # copy the source file to the target directory
+                target_subdir = target_include / rpth.parent
+                target_subdir.mkdir(parents=True, exist_ok=True)
+                self.copy_file(str(pth), str(target_subdir))
 
 
 # See pyproject.toml for other project metadata

tests/test_finder.py

@@ -0,0 +1,19 @@
+from ctypes import CDLL
+from pathlib import Path
+
+from rtree import finder
+
+
+def test_load():
+    lib = finder.load()
+    assert isinstance(lib, CDLL)
+
+
+def test_get_include():
+    incl = finder.get_include()
+    assert isinstance(incl, str)
+    if incl:
+        path = Path(incl)
+        assert path.is_dir()
+        assert (path / "spatialindex").is_dir()
+        assert (path / "spatialindex" / "SpatialIndex.h").is_file()