Hello from the BrainGlobe team!
We're just about to release a new major version of brainglobe-atlasapi. There are minimal changes to the Python API, however, the structure of the atlases on disk has been altered significantly. Array-based data is now stored as OME-Zarr, and meshes are in the neuroglancer precomputed format. Atlas components are now reused across atlases, and fetched lazily. Atlases are now stored in .brainglobe/brainglobe-atlasapi by default. Existing atlases (e.g. .brainglobe/allen_mouse_25um) can be safely deleted. See the blog post for more details.
You can install the current pre-release version with pip install brainglobe-atlasapi==3.0.0rc2.
Please contact us on Zulip if you encounter any issues with the new version!
Hello from the BrainGlobe team!
We're just about to release a new major version of
brainglobe-atlasapi. There are minimal changes to the Python API, however, the structure of the atlases on disk has been altered significantly. Array-based data is now stored as OME-Zarr, and meshes are in the neuroglancer precomputed format. Atlas components are now reused across atlases, and fetched lazily. Atlases are now stored in.brainglobe/brainglobe-atlasapiby default. Existing atlases (e.g..brainglobe/allen_mouse_25um) can be safely deleted. See the blog post for more details.You can install the current pre-release version with
pip install brainglobe-atlasapi==3.0.0rc2.Please contact us on Zulip if you encounter any issues with the new version!