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penelopeysmpenelopeysm
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Tests pass
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4 files changed

+67
-54
lines changed

4 files changed

+67
-54
lines changed

‎src/logdensityfunction.jl

+3-2
Original file line numberDiff line numberDiff line change
@@ -138,8 +138,8 @@ struct LogDensityFunctionWithGrad{V,M,C,TAD<:ADTypes.AbstractADType}
138138
function LogDensityFunctionWithGrad(
139139
ldf::LogDensityFunction{V,M,C}, adtype::TAD
140140
) where {V,M,C,TAD}
141-
# Get a set of dummy params to use for prep
142-
x = ldf.varinfo[:]
141+
# Get a set of dummy params to use for prep and concretise type
142+
x = map(identity, getparams(ldf))
143143
prep = DI.prepare_gradient(_flipped_logdensity, adtype, x, DI.Constant(ldf))
144144
# Store the prep with the struct
145145
return new{V,M,C,TAD}(ldf, adtype, prep)
@@ -156,6 +156,7 @@ end
156156
function LogDensityProblems.logdensity_and_gradient(
157157
f::LogDensityFunctionWithGrad, x::AbstractVector
158158
)
159+
x = map(identity, x) # Concretise type
159160
return DI.value_and_gradient(
160161
_flipped_logdensity, f.prep, f.adtype, x, DI.Constant(f.ldf)
161162
)

‎test/ad.jl

+10-7
Original file line numberDiff line numberDiff line change
@@ -6,9 +6,7 @@
66

77
@testset "$(short_varinfo_name(varinfo))" for varinfo in varinfos
88
f = DynamicPPL.LogDensityFunction(m, varinfo)
9-
# convert to `Vector{Float64}` to avoid `ReverseDiff` initializing the gradients to Integer 0
10-
# reference: https://github.com/TuringLang/DynamicPPL.jl/pull/571#issuecomment-1924304489
11-
x = convert(Vector{Float64}, varinfo[:])
9+
x = DynamicPPL.getparams(f)
1210
# Calculate reference logp + gradient of logp using ForwardDiff
1311
default_adtype = ADTypes.AutoForwardDiff()
1412
ldf_with_grad = DynamicPPL.LogDensityFunctionWithGrad(f, default_adtype)
@@ -21,10 +19,15 @@
2119
ADTypes.AutoReverseDiff(; compile=true),
2220
ADTypes.AutoMooncake(; config=nothing),
2321
]
24-
# Mooncake can't currently handle something that is going on in
25-
# SimpleVarInfo{<:VarNamedVector}. Disable all SimpleVarInfo tests for now.
26-
if adtype isa ADTypes.AutoMooncake && varinfo isa DynamicPPL.SimpleVarInfo
27-
@test_broken 1 == 0
22+
@info "Testing AD on: $(m.f) - $(short_varinfo_name(varinfo)) - $adtype"
23+
24+
# Mooncake doesn't work with SimpleVarInfo{<:VarNamedVector}
25+
# https://github.com/compintell/Mooncake.jl/issues/470
26+
if adtype isa ADTypes.AutoMooncake &&
27+
varinfo isa DynamicPPL.SimpleVarInfo{<:DynamicPPL.VarNamedVector}
28+
@test_throws ArgumentError DynamicPPL.LogDensityFunctionWithGrad(
29+
f, adtype
30+
)
2831
else
2932
ldf_with_grad = DynamicPPL.LogDensityFunctionWithGrad(f, adtype)
3033
logp, grad = LogDensityProblems.logdensity_and_gradient(

‎test/runtests.jl

+45-45
Original file line numberDiff line numberDiff line change
@@ -45,56 +45,56 @@ include("test_util.jl")
4545
# groups are chosen to make both groups take roughly the same amount of
4646
# time, but beyond that there is no particular reason for the split.
4747
if GROUP == "All" || GROUP == "Group1"
48-
include("utils.jl")
49-
include("compiler.jl")
50-
include("varnamedvector.jl")
51-
include("varinfo.jl")
52-
include("simple_varinfo.jl")
53-
include("model.jl")
54-
include("sampler.jl")
55-
include("independence.jl")
56-
include("distribution_wrappers.jl")
57-
include("logdensityfunction.jl")
58-
include("linking.jl")
59-
include("serialization.jl")
60-
include("pointwise_logdensities.jl")
61-
include("lkj.jl")
62-
include("deprecated.jl")
48+
# include("utils.jl")
49+
# include("compiler.jl")
50+
# include("varnamedvector.jl")
51+
# include("varinfo.jl")
52+
# include("simple_varinfo.jl")
53+
# include("model.jl")
54+
# include("sampler.jl")
55+
# include("independence.jl")
56+
# include("distribution_wrappers.jl")
57+
# include("logdensityfunction.jl")
58+
# include("linking.jl")
59+
# include("serialization.jl")
60+
# include("pointwise_logdensities.jl")
61+
# include("lkj.jl")
62+
# include("deprecated.jl")
6363
end
6464

6565
if GROUP == "All" || GROUP == "Group2"
66-
include("contexts.jl")
67-
include("context_implementations.jl")
68-
include("threadsafe.jl")
69-
include("debug_utils.jl")
70-
@testset "compat" begin
71-
include(joinpath("compat", "ad.jl"))
72-
end
73-
@testset "extensions" begin
74-
include("ext/DynamicPPLMCMCChainsExt.jl")
75-
include("ext/DynamicPPLJETExt.jl")
76-
end
66+
# include("contexts.jl")
67+
# include("context_implementations.jl")
68+
# include("threadsafe.jl")
69+
# include("debug_utils.jl")
70+
# @testset "compat" begin
71+
# include(joinpath("compat", "ad.jl"))
72+
# end
73+
# @testset "extensions" begin
74+
# include("ext/DynamicPPLMCMCChainsExt.jl")
75+
# include("ext/DynamicPPLJETExt.jl")
76+
# end
7777
@testset "ad" begin
78-
include("ext/DynamicPPLMooncakeExt.jl")
78+
# include("ext/DynamicPPLMooncakeExt.jl")
7979
include("ad.jl")
8080
end
81-
@testset "prob and logprob macro" begin
82-
@test_throws ErrorException prob"..."
83-
@test_throws ErrorException logprob"..."
84-
end
85-
@testset "doctests" begin
86-
DocMeta.setdocmeta!(
87-
DynamicPPL,
88-
:DocTestSetup,
89-
:(using DynamicPPL, Distributions);
90-
recursive=true,
91-
)
92-
doctestfilters = [
93-
# Ignore the source of a warning in the doctest output, since this is dependent on host.
94-
# This is a line that starts with "└ @ " and ends with the line number.
95-
r"└ @ .+:[0-9]+",
96-
]
97-
doctest(DynamicPPL; manual=false, doctestfilters=doctestfilters)
98-
end
81+
# @testset "prob and logprob macro" begin
82+
# @test_throws ErrorException prob"..."
83+
# @test_throws ErrorException logprob"..."
84+
# end
85+
# @testset "doctests" begin
86+
# DocMeta.setdocmeta!(
87+
# DynamicPPL,
88+
# :DocTestSetup,
89+
# :(using DynamicPPL, Distributions);
90+
# recursive=true,
91+
# )
92+
# doctestfilters = [
93+
# # Ignore the source of a warning in the doctest output, since this is dependent on host.
94+
# # This is a line that starts with "└ @ " and ends with the line number.
95+
# r"└ @ .+:[0-9]+",
96+
# ]
97+
# doctest(DynamicPPL; manual=false, doctestfilters=doctestfilters)
98+
# end
9999
end
100100
end

‎test/test_util.jl

+9
Original file line numberDiff line numberDiff line change
@@ -56,6 +56,15 @@ function short_varinfo_name(vi::TypedVarInfo)
5656
end
5757
short_varinfo_name(::UntypedVarInfo) = "UntypedVarInfo"
5858
short_varinfo_name(::DynamicPPL.VectorVarInfo) = "VectorVarInfo"
59+
function short_varinfo_name(::SimpleVarInfo{<:NamedTuple,<:Ref})
60+
return "SimpleVarInfo{<:NamedTuple,<:Ref}"
61+
end
62+
function short_varinfo_name(::SimpleVarInfo{<:OrderedDict,<:Ref})
63+
return "SimpleVarInfo{<:OrderedDict,<:Ref}"
64+
end
65+
function short_varinfo_name(::SimpleVarInfo{<:DynamicPPL.VarNamedVector,<:Ref})
66+
return "SimpleVarInfo{<:VarNamedVector,<:Ref}"
67+
end
5968
short_varinfo_name(::SimpleVarInfo{<:NamedTuple}) = "SimpleVarInfo{<:NamedTuple}"
6069
short_varinfo_name(::SimpleVarInfo{<:OrderedDict}) = "SimpleVarInfo{<:OrderedDict}"
6170
function short_varinfo_name(::SimpleVarInfo{<:DynamicPPL.VarNamedVector})

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