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TissueEnrich: R package to carry out tissue-specific gene enrichment.

bioc bioc bioc

Citation

If you use TissueEnrich in published research, please cite:

Jain, A, Tuteja, G. (2018) TissueEnrich: Tissue-specific gene enrichment analysis. Bioinformatics, bty890. 10.1093/bioinformatics/bty890

Requirement

You need R version above 3.5 to run this application. Other dependencies are:

  • dplyr (>= 0.7.3)
  • ensurer (>= 1.1)
  • ggplot2 (>= 2.2.1)
  • tidyr (>=0.8.0)
  • SummarizedExperiment (>= 1.6.5)
  • GSEABase (>= 1.38.2)

How to install the R package

From Bioconductor

BiocManager::install("TissueEnrich")

From Github

  • Install Dependencies
  • install.packages(c("dplyr","ensurer","ggplot2","tidyr"))
  • install.packages("BiocManager")
  • BiocManager::install("SummarizedExperiment")
  • BiocManager::install("GSEABase")
  • Now install the devtools package
  • install.packages("devtools")
  • library(devtools)
  • Run command install_github("Tuteja-Lab/TissueEnrich")

More about the package

  • Check more details about the package in the vignette vignette("TissueEnrich")