Merge pull request #11 from UBC-STAT/dockerfile-updates-2024W1

Update dockerfiles

Author: briank-git

.github/workflows/publish_docker_images.yml

@@ -3,6 +3,7 @@ on:
   push: 
     paths: 
       - 'dockerfiles/r-stat-201/Dockerfile'
+      - 'dockerfiles/r-stat-201/conda-linux-64.lock'
       - 'dockerfiles/r-stat-201-grading/Dockerfile'
 jobs:
   build:

dockerfiles/r-stat-201-grading/Dockerfile

@@ -1,17 +1,11 @@
 # Copyright (c) UBC-STAT Development Team.
 # Distributed under the terms of the Modified BSD License.
-# TODO: For testing purposes only, change to ubcstat/r-stat-201:latest
-FROM ubcstatit/r-stat-201-student:latest
+FROM ubcstat/r-stat-201:latest
 
 LABEL maintainer="Brian Kim <[email protected]>"
 
 # install rise slides extension, nbgrader, clean cache
-RUN mamba install --quiet --yes \
-    'nbgrader=0.8.2' && \
-    mamba clean --all -f -y
-
-# re-upgrade jupyter-server (mamba downgrades it)
-RUN pip install --upgrade jupyter-server
+RUN pip install --no-cache nbgrader
 
 # Allow all shortcuts
 RUN rm -f /home/${NB_USER}/.jupyter/lab/user-settings/\@jupyterlab/shortcuts-extension/shortcuts.jupyterlab-settings

dockerfiles/r-stat-201/Dockerfile

@@ -32,15 +32,15 @@ ENV PYDEVD_DISABLE_FILE_VALIDATION=1
 COPY conda-linux-64.lock /tmp/conda-linux-64.lock
 
 # Install R packages from lock file.
-RUN mamba update --quiet --file /tmp/conda-linux-64.lock && \
-	mamba clean --all -y -f && \
-	fix-permissions "${CONDA_DIR}" && \
-	fix-permissions "/home/${NB_USER}" && \
-	Rscript -e "devtools::install_github('UBC-MDS/[email protected]')" && \
-	Rscript -e "devtools::install_github('UBC-MDS/[email protected]')" 
+RUN mamba update --quiet --file /tmp/conda-linux-64.lock \
+	&& mamba clean --all -y -f \
+	&& fix-permissions "${CONDA_DIR}" \
+	&& fix-permissions "/home/${NB_USER}" \
+	&& Rscript -e "devtools::install_github('UBC-MDS/[email protected]')" \
+	&& Rscript -e "devtools::install_github('UBC-MDS/[email protected]')" 
 
 # Install pexpect from main branch to fix asyncio issue with jupyterlab_git
-RUN pip install --ignore-installed git+https://github.com/pexpect/pexpect.git@master
+RUN pip install --no-cache pexpect==4.9.0
 
 # Disable the cell toolbar (which ignores metadata and students often accidentally click + delete grading cells)
 RUN jupyter labextension disable @jupyterlab/cell-toolbar-extension
@@ -57,6 +57,10 @@ COPY config/jupyter_server_config.py /home/${NB_USER}/.jupyter
 # Copy gitconfig that sets global default pull strategy to rebase
 COPY config/.gitconfig /home/${NB_USER}/
 
+# install rise from fork wheel with fixed CSS
+COPY jupyterlab_rise-0.42.0-py3-none-any.whl ./
+RUN pip install wheel && pip install jupyterlab_rise-0.42.0-py3-none-any.whl && rm -f jupyterlab_rise-0.42.0-py3-none-any.whl
+
 # Make sure everything in the home folder is owned by NB_USER for running docker image locally.
 USER root
 RUN chown -R ${NB_USER} /home/${NB_USER}