Skip to content

Commit bb00b79

Browse files
committed
Update index.rst
1 parent b00105b commit bb00b79

File tree

1 file changed

+3
-3
lines changed

1 file changed

+3
-3
lines changed

doc/index.rst

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -25,15 +25,15 @@ Interoperability - cadnano v2
2525

2626
Scadnano provides function to convert design to and from cadnano v2:
2727

28-
* :py:meth:`scadnano.DNADesign.from_cadnano_v2` will create a scadnano DNADesign from a ``cadnanov2`` json file.
29-
* :py:meth:`scadnano.DNADesign.export_cadnano_v2` will produce a ``cadnanov2`` json file from a scadnano design.
28+
* :meth:`scadnano.DNADesign.from_cadnano_v2` will create a scadnano DNADesign from a ``cadnanov2`` json file.
29+
* :meth:`scadnano.DNADesign.export_cadnano_v2` will produce a ``cadnanov2`` json file from a scadnano design.
3030

3131
**Important**
3232

3333
All ``cadnanov2`` designs can be imported to scadnano. However **not all scadnano designs can be imported
3434
to cadnanov2**, to be exportable to ``cadnanov2`` a scadnano design need to comply with the following points:
3535

36-
* The design cannot feature any :py:class:`Loopout` as it is not a concept that exists in ``cadnanov2``.
36+
* The design cannot feature any :class:`Loopout` or :class:`Extension`, since these are not concepts that exist in ``cadnanov2``.
3737
* Following ``cadnanov2`` conventions, helices with **even** number must have their scaffold going **forward** and helices with **odd** number **backward**.
3838
* If you use paranemic crossovers (i.e. crossovers where the domains before and after the crossover are in the same direction), the helices' row number (i.e. not the helices' indexes but their y coordinate) of the domains must have the same parity e.g. rows 0 and 2, or 1 and 3, but not 0 and 1.
3939

0 commit comments

Comments
 (0)