Add pkgdown author profiles #861
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # | |
| # NOTE: This workflow is overkill for most R packages and | |
| # check-standard.yaml is likely a better choice. | |
| # usethis::use_github_action("check-standard") will install it. | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check-final | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| # - {os: macOS-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: windows-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | |
| any::rcmdcheck | |
| any::tinytest | |
| local::. | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| if: ${{ matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release' }} | |
| with: | |
| args: 'c("--as-cran", "--no-manual")' | |
| upload-snapshots: false | |
| upload-results: false | |
| check-dir: '"check"' | |
| error-on: '"warning"' | |
| - uses: r-lib/actions/check-r-package@v2 | |
| if: ${{ matrix.config.os != 'ubuntu-latest' || matrix.config.r != 'release' }} | |
| with: | |
| upload-snapshots: false | |
| upload-results: false | |
| check-dir: '"check"' | |
| error-on: '"warning"' | |
| - name: Build the package | |
| if: ${{ matrix.config.os == 'ubuntu-latest' && (matrix.config.r == 'release' || matrix.config.r == 'devel') }} | |
| run: R CMD build . | |
| - uses: actions/upload-artifact@v7 | |
| if: ${{ matrix.config.os == 'ubuntu-latest' && (matrix.config.r == 'release' || matrix.config.r == 'devel') }} | |
| with: | |
| name: epiworldR-built-package-${{ matrix.config.os }}-${{ matrix.config.r }} | |
| path: epiworldR_*.tar.gz | |
| retention-days: 7 | |
| epiworldShiny: | |
| runs-on: ubuntu-latest | |
| container: rocker/tidyverse:4.4.0 | |
| steps: | |
| - uses: actions/checkout@v6 | |
| with: | |
| repository: 'UofUEpiBio/epiworldRShiny' | |
| ref: 'main' | |
| fetch-depth: 1 | |
| - name: Install dependencies | |
| run: | | |
| install2.r -n 2 shinyjs shinydashboard DT shinycssloaders plotly | |
| installGithub.r UofUEpiBio/epiworldR@${{ github.sha }} | |
| - name: Check the package | |
| run: | | |
| R CMD build . | |
| R CMD check --no-manual epiworldRShiny_*tar.gz | |
| epiworldRShiny-cran: | |
| runs-on: ubuntu-latest | |
| container: rocker/tidyverse:4.4.0 | |
| steps: | |
| - name: Get epiworldRShiny | |
| run: | | |
| # Get the latest version from CRAN | |
| apt-get update && apt-get install curl jq -y --no-install-recommends | |
| LATEST_VERSION=$(curl -s https://crandb.r-pkg.org/epiworldRShiny | jq -r '.Version') | |
| wget \ | |
| https://cran.r-project.org/src/contrib/epiworldRShiny_${LATEST_VERSION}.tar.gz | |
| - name: Install dependencies | |
| run: | | |
| install2.r -n 2 shinyjs shinydashboard DT shinycssloaders plotly | |
| installGithub.r UofUEpiBio/epiworldR@${{ github.sha }} | |
| - name: Check the package | |
| run: | | |
| R CMD check --no-manual epiworldRShiny_*tar.gz | |
| measles: | |
| runs-on: ubuntu-latest | |
| container: rocker/tidyverse:4.4.0 | |
| steps: | |
| - uses: actions/checkout@v6 | |
| with: | |
| repository: 'UofUEpiBio/measles' | |
| ref: 'main' | |
| fetch-depth: 1 | |
| - name: Setup js | |
| run: | | |
| apt-get update && apt-get install curl jq -y --no-install-recommends | |
| - uses: quarto-dev/quarto-actions/setup@v2.2.0 | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install epiworldR from this branch and other dependencies | |
| run: | | |
| installGithub.r UofUEpiBio/epiworldR@${{ github.sha }} | |
| install2.r --error quarto tinytest data.table | |
| - name: Check the package | |
| run: | | |
| R CMD build . | |
| R CMD check --no-manual measles_*tar.gz |