Adding the debian check

Author: gvegayon

.github/workflows/debian-r-cmd-check.yml

@@ -0,0 +1,52 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+#
+# NOTE: This workflow is overkill for most R packages and
+# check-standard.yaml is likely a better choice.
+# usethis::use_github_action("check-standard") will install it.
+on:
+  pull_request:
+    branches: [main, master]
+  workflow_dispatch:
+
+name: Debian R CMD check
+
+env:
+  GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+jobs:
+
+  R-CMD-check:
+    container:
+      image: cran/debian:latest
+
+    runs-on: ubuntu-latest
+
+    name: Debian R CMD check (latest R)
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: devel
+          http-user-agent: release
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: false
+          upload-results: false
+          check-dir: '"check"'
+          error-on: '"warning"'

inst/tinytest/test-sir.R

@@ -36,12 +36,6 @@ run(sir_0, ndays = 50, seed = 1912)
 tmat_noqueuing <- get_transition_probability(sir_0)
 expect_identical(tmat_noqueuing, tmat_queuing)
 
-# Check queuing is faster ------------------------------------------------------
-runtime_noqueuing <- system.time(run(sir_0, ndays = 50, seed = 1912))
-queuing_on(sir_0)
-runtime_queuing <- system.time(run(sir_0, ndays = 50, seed = 1912))
-expect_true(runtime_queuing["elapsed"] < runtime_noqueuing["elapsed"])
-
 # Check functions fail with invalid inputs -------------------------------------
 good_name <- "A Virus"
 good_prevalence <- 0.01