From 42ee35ae17116809e4b0abd262e26447de1c21dc Mon Sep 17 00:00:00 2001
From: Sima Najafzadehkhoei <u1418987@umail.utah.edu>
Date: Tue, 10 Dec 2024 15:06:18 -0700
Subject: [PATCH] yaml is updated

---
 .github/workflows/R-CMD-check.yaml | 5 ++++-
 R/simulate_calibrate_sir.R         | 2 ++
 R/train_model.R                    | 1 +
 man/simulate_calibrate_sir.Rd      | 4 ++++
 man/train_model.Rd                 | 2 ++
 5 files changed, 13 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index 1e16cb2..ac482cb 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -15,7 +15,7 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macos-latest,   r: 'release'}
+          - {os: macos-12,   r: 'release'}
           - {os: windows-latest, r: 'release'}
           - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-latest,   r: 'release'}
@@ -28,6 +28,9 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
+      - name: Set TAR options to suppress warnings
+        run: echo "TAR=tar --no-same-owner" >> $GITHUB_ENV
+
       - uses: r-lib/actions/setup-pandoc@v2
 
       - uses: r-lib/actions/setup-r@v2
diff --git a/R/simulate_calibrate_sir.R b/R/simulate_calibrate_sir.R
index 1d6dcfd..8b3ee0a 100644
--- a/R/simulate_calibrate_sir.R
+++ b/R/simulate_calibrate_sir.R
@@ -8,6 +8,8 @@
 #' @param n Integer. The population size for each simulation.
 #' @param ndays Integer. The number of days to simulate.
 #' @param ncores Integer. The number of cores to use for parallel processing.
+#' @param epochs Integer. The number of training.
+#' @param verbose Integer. 0 shows the result of training and 2 doesnt.
 #' @return Executes the pipeline and generates plots.
 #' @export
 # N=2e4
diff --git a/R/train_model.R b/R/train_model.R
index d0c944b..ba21fdf 100644
--- a/R/train_model.R
+++ b/R/train_model.R
@@ -6,6 +6,7 @@
 #' @param model Keras model. The compiled model to be trained.
 #' @param train_data List. A list containing training data (`x` and `y`).
 #' @param epochs Integer. The number of epochs for training.
+#' @param verbose Integer. 0 shows the result of training and 2 doesnt.
 #' @return The trained model (updated in place).
 #' @export
 train_model <- function(model, train_data, epochs = epochs,verbose=verbose) {
diff --git a/man/simulate_calibrate_sir.Rd b/man/simulate_calibrate_sir.Rd
index 18d43c8..9502c3c 100644
--- a/man/simulate_calibrate_sir.Rd
+++ b/man/simulate_calibrate_sir.Rd
@@ -14,6 +14,10 @@ simulate_calibrate_sir(N, n, ndays, ncores, epochs, verbose)
 \item{ndays}{Integer. The number of days to simulate.}
 
 \item{ncores}{Integer. The number of cores to use for parallel processing.}
+
+\item{epochs}{Integer. The number of training.}
+
+\item{verbose}{Integer. 0 shows the result of training and 2 doesnt.}
 }
 \value{
 Executes the pipeline and generates plots.
diff --git a/man/train_model.Rd b/man/train_model.Rd
index c2a80c5..2f7ecb1 100644
--- a/man/train_model.Rd
+++ b/man/train_model.Rd
@@ -12,6 +12,8 @@ train_model(model, train_data, epochs = epochs, verbose = verbose)
 \item{train_data}{List. A list containing training data (\code{x} and \code{y}).}
 
 \item{epochs}{Integer. The number of epochs for training.}
+
+\item{verbose}{Integer. 0 shows the result of training and 2 doesnt.}
 }
 \value{
 The trained model (updated in place).