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example.local.env
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# This example environment is intended to keep things simple for local development.
# As is, it connects to a single database, ameb063 (adjust this as needed)
# Set this to the path on your local machine into which file-based datasets
# should be installed.
DATASET_DIRECTORY_SOURCE_PATH=/some/local/path
# create this dir locally under /some/local/path.
SITE_BUILD=build-65
# This controls the path inside the container that the dataset directory is
# mounted. Shouldn't need to be changed.
DATASET_DIRECTORY_TARGET_PATH=/datasets
# Rest Service Configuration
AUTH_SECRET_KEY=
LDAP_SERVER=
ADMIN_AUTH_TOKEN=someAuthToken
ORACLE_BASE_DN=ou=applications,dc=apidb,dc=org
ENABLE_CORS=true
VDI_SERVICE_HTTP_PORT=80
# Oauth Service Configuration
OAUTH_CLIENT_ID=
OAUTH_CLIENT_SECRET=
# optional for local dev. defaults to trusting all certificates
KEY_STORE_FILE=
KEY_STORE_PASS_PHRASE=
OAUTH_URL=https://eupathdb.org/oauth
# # # # # # # # # # # # # # #
# App Database Connections #
# # # # # # # # # # # # # # #
# DB_CONNECTION_{VARIABLE}_{SUFFIX} wildcard variable groups. These env vars
# are grouped by the value of {SUFFIX}.
DB_CONNECTION_ENABLED_AMOEBA=true
DB_CONNECTION_NAME_AMOEBA=AmoebaDB
DB_CONNECTION_LDAP_AMOEBA=ameb063n
DB_CONNECTION_PASS_AMOEBA=someDBPass
DB_CONNECTION_DATA_SCHEMA_AMOEBA=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_AMOEBA=vdi_control_dev_n
#############################################################################################################################
#################### sections below typically do not need adjusting for local development ###################################
#############################################################################################################################
#
# Reconciler config
#
# Frequency at which the dataset reconciler will attempt to run automatically.
RECONCILER_FULL_RUN_INTERVAL=6h
RECONCILER_SLIM_RUN_INTERVAL=5m
# Determines whether reconciler should run automatically.
RECONCILER_ENABLED=false
# Determines whether the reconciler should perform deletes
RECONCILER_DELETES_ENABLED=false
#
# External RabbitMQ Connection
#
GLOBAL_RABBIT_USERNAME=someUser
GLOBAL_RABBIT_PASSWORD=somePassword
GLOBAL_RABBIT_HOST=rabbit-external
GLOBAL_RABBIT_VDI_EXCHANGE_NAME=vdi-bucket-notifications
GLOBAL_RABBIT_VDI_QUEUE_NAME=vdi-bucket-notifications
GLOBAL_RABBIT_VDI_ROUTING_KEY=vdi-bucket-notifications
#
# Internal Kafka Connection
#
KAFKA_SERVERS=kafka:9092
KAFKA_PRODUCER_CLIENT_ID=vdi-event-router
KAFKA_CONSUMER_GROUP_ID=vdi-kafka-consumers
KAFKA_ADVERTISED_LISTENERS=PLAINTEXT://kafka:9092
#
# External MinIO Connection
#
S3_HOST=minio-external
S3_PORT=9000
S3_USE_HTTPS=false
S3_ACCESS_TOKEN=someToken
S3_SECRET_KEY=someSecretKey
S3_BUCKET_NAME=some-other-bucket
#
# Internal Cache DB Connection
#
CACHE_DB_USERNAME=someUser
CACHE_DB_PASSWORD=somePassword
CACHE_DB_NAME=vdi
CACHE_DB_HOST=cache-db
CACHE_DB_PORT=5432
CACHE_DB_POOL_SIZE=5
# # # # # # # # # #
# Plugin Services #
# # # # # # # # # #
# No-Op Plugin
PLUGIN_HANDLER_NOOP_NAME=noop
PLUGIN_HANDLER_NOOP_DISPLAY_NAME="Example Plugin"
PLUGIN_HANDLER_NOOP_VERSION=1.0
PLUGIN_HANDLER_NOOP_ADDRESS=example:80
PLUGIN_HANDLER_NOOP_PROJECT_IDS=
# GeneList Plugin
PLUGIN_HANDLER_GENELIST_NAME=genelist
PLUGIN_HANDLER_GENELIST_DISPLAY_NAME="Gene List"
PLUGIN_HANDLER_GENELIST_VERSION=1.0
PLUGIN_HANDLER_GENELIST_ADDRESS=genelist:80
PLUGIN_HANDLER_GENELIST_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase
# ISASimple Plugin
PLUGIN_HANDLER_ISASIMPLE_NAME=isasimple
PLUGIN_HANDLER_ISASIMPLE_DISPLAY_NAME="ISA Simple"
PLUGIN_HANDLER_ISASIMPLE_VERSION=1.0
PLUGIN_HANDLER_ISASIMPLE_ADDRESS=isasimple:80
PLUGIN_HANDLER_ISASIMPLE_PROJECT_IDS=ClinEpiDB
# BigWig Plugin
PLUGIN_HANDLER_BIGWIG_NAME=bigwigfiles
PLUGIN_HANDLER_BIGWIG_DISPLAY_NAME=Bigwig
PLUGIN_HANDLER_BIGWIG_VERSION=1.0
PLUGIN_HANDLER_BIGWIG_ADDRESS=bigwig:80
PLUGIN_HANDLER_BIGWIG_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase
# BIOM Plugin
PLUGIN_HANDLER_BIOM_NAME=biom
PLUGIN_HANDLER_BIOM_DISPLAY_NAME=BIOM
PLUGIN_HANDLER_BIOM_VERSION=1.0
PLUGIN_HANDLER_BIOM_ADDRESS=biom:80
PLUGIN_HANDLER_BIOM_PROJECT_IDS=MicrobiomeDB
# RNAseq Plugin
PLUGIN_HANDLER_RNASEQ_NAME=rnaseq
PLUGIN_HANDLER_RNASEQ_DISPLAY_NAME=RNA-Seq
PLUGIN_HANDLER_RNASEQ_VERSION=1.0
PLUGIN_HANDLER_RNASEQ_ADDRESS=rnaseq:80
PLUGIN_HANDLER_RNASEQ_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase
# Study Wrangler Plugin
PLUGIN_HANDLER_WRANGLER_NAME=phenotype
PLUGIN_HANDLER_WRANGLER_DISPLAY_NAME=Phenotype
PLUGIN_HANDLER_WRANGLER_VERSION=1.0
PLUGIN_HANDLER_WRANGLER_ADDRESS=wrangler:80
PLUGIN_HANDLER_WRANGLER_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase,VEuPathDB