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example.min.env
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# Image Versions
DATASET_DIRECTORY_SOURCE_PATH=/var/www/Common/userDatasets/vdi_datasets_feat_s/
DATASET_DIRECTORY_TARGET_PATH=/datasets
# Rest Service Configuration
VDI_SERVICE_HTTP_PORT=80
AUTH_SECRET_KEY=
ADMIN_AUTH_TOKEN=
LDAP_SERVER=
ORACLE_BASE_DN=ou=applications,dc=apidb,dc=org
ENABLE_CORS=false
# Oauth Service Configuration
OAUTH_CLIENT_ID=
OAUTH_CLIENT_SECRET=
KEY_STORE_FILE=
KEY_STORE_PASS_PHRASE=
OAUTH_URL=https://eupathdb.org/oauth
# External RabbitMQ Connection
GLOBAL_RABBIT_USERNAME=someUser
GLOBAL_RABBIT_PASSWORD=somePassword
GLOBAL_RABBIT_HOST=rabbit-external
GLOBAL_RABBIT_VDI_EXCHANGE_NAME=vdi-bucket-notifications
GLOBAL_RABBIT_VDI_QUEUE_NAME=vdi-bucket-notifications
GLOBAL_RABBIT_VDI_ROUTING_KEY=vdi-bucket-notifications
# Internal Kafka Connection
KAFKA_SERVERS=kafka:9092
KAFKA_PRODUCER_CLIENT_ID=vdi-event-router
KAFKA_CONSUMER_GROUP_ID=vdi-kafka-consumers
KAFKA_ADVERTISED_LISTENERS=PLAINTEXT://kafka:9092
# External MinIO Connection
S3_HOST=minio-external
S3_PORT=9000
S3_USE_HTTPS=true
S3_ACCESS_TOKEN=someToken
S3_SECRET_KEY=someSecretKey
S3_BUCKET_NAME=some-other-bucket
# Internal Cache DB Connection
CACHE_DB_USERNAME=someUser
CACHE_DB_PASSWORD=somePassword
CACHE_DB_NAME=vdi
CACHE_DB_HOST=cache-db
CACHE_DB_PORT=5432
CACHE_DB_POOL_SIZE=5
# # # # # # # # # #
# Plugin Services #
# # # # # # # # # #
# Global
SITE_BUILD=build-65
# No-Op Plugin
PLUGIN_HANDLER_NOOP_NAME=noop
PLUGIN_HANDLER_NOOP_DISPLAY_NAME="Example Plugin"
PLUGIN_HANDLER_NOOP_VERSION=1.0
PLUGIN_HANDLER_NOOP_ADDRESS=example:80
PLUGIN_HANDLER_NOOP_PROJECT_IDS=
# GeneList Plugin
PLUGIN_HANDLER_GENELIST_NAME=genelist
PLUGIN_HANDLER_GENELIST_DISPLAY_NAME="Gene List"
PLUGIN_HANDLER_GENELIST_VERSION=1.0
PLUGIN_HANDLER_GENELIST_ADDRESS=genelist:80
PLUGIN_HANDLER_GENELIST_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase
# ISASimple Plugin
PLUGIN_HANDLER_ISASIMPLE_NAME=isasimple
PLUGIN_HANDLER_ISASIMPLE_DISPLAY_NAME="ISA Simple"
PLUGIN_HANDLER_ISASIMPLE_VERSION=1.0
PLUGIN_HANDLER_ISASIMPLE_ADDRESS=isasimple:80
PLUGIN_HANDLER_ISASIMPLE_PROJECT_IDS=ClinEpiDB
# BigWig Plugin
PLUGIN_HANDLER_BIGWIG_NAME=bigwigfiles
PLUGIN_HANDLER_BIGWIG_DISPLAY_NAME=Bigwig
PLUGIN_HANDLER_BIGWIG_VERSION=1.0
PLUGIN_HANDLER_BIGWIG_ADDRESS=bigwig:80
PLUGIN_HANDLER_BIGWIG_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase
# BIOM Plugin
PLUGIN_HANDLER_BIOM_NAME=biom
PLUGIN_HANDLER_BIOM_DISPLAY_NAME=BIOM
PLUGIN_HANDLER_BIOM_VERSION=1.0
PLUGIN_HANDLER_BIOM_ADDRESS=biom:80
PLUGIN_HANDLER_BIOM_PROJECT_IDS=MicrobiomeDB
# RNAseq Plugin
PLUGIN_HANDLER_RNASEQ_NAME=rnaseq
PLUGIN_HANDLER_RNASEQ_DISPLAY_NAME=RNA-Seq
PLUGIN_HANDLER_RNASEQ_VERSION=1.0
PLUGIN_HANDLER_RNASEQ_ADDRESS=rnaseq:80
PLUGIN_HANDLER_RNASEQ_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase
# Study Wrangler Plugin
PLUGIN_HANDLER_WRANGLER_NAME=phenotype
PLUGIN_HANDLER_WRANGLER_DISPLAY_NAME=Phenotype
PLUGIN_HANDLER_WRANGLER_VERSION=1.0
PLUGIN_HANDLER_WRANGLER_ADDRESS=wrangler:80
PLUGIN_HANDLER_WRANGLER_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase,VEuPathDB
# # # # # # # # # # # # # # #
# App Database Connections #
# # # # # # # # # # # # # # #
DB_CONNECTION_ENABLED_AMOEBA=true
DB_CONNECTION_NAME_AMOEBA=AmoebaDB
DB_CONNECTION_LDAP_AMOEBA=
DB_CONNECTION_PASS_AMOEBA=someDBPass
DB_CONNECTION_DATA_SCHEMA_AMOEBA=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_AMOEBA=vdi_control_dev_n
DB_CONNECTION_ENABLED_CRYPTO=true
DB_CONNECTION_NAME_CRYPTO=CryptoDB
DB_CONNECTION_LDAP_CRYPTO=
DB_CONNECTION_PASS_CRYPTO=someDBPass
DB_CONNECTION_DATA_SCHEMA_CRYPTO=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_CRYPTO=vdi_control_dev_n
DB_CONNECTION_ENABLED_FUNGI=true
DB_CONNECTION_NAME_FUNGI=FungiDB
DB_CONNECTION_LDAP_FUNGI=
DB_CONNECTION_PASS_FUNGI=someDBPass
DB_CONNECTION_DATA_SCHEMA_FUNGI=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_FUNGI=vdi_control_dev_n
DB_CONNECTION_ENABLED_GIARDIA=true
DB_CONNECTION_NAME_GIARDIA=GiardiaDB
DB_CONNECTION_LDAP_GIARDIA=
DB_CONNECTION_PASS_GIARDIA=someDBPass
DB_CONNECTION_DATA_SCHEMA_GIARDIA=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_GIARDIA=vdi_control_dev_n
DB_CONNECTION_ENABLED_HOST=true
DB_CONNECTION_NAME_HOST=HostDB
DB_CONNECTION_LDAP_HOST=
DB_CONNECTION_PASS_HOST=someDBPass
DB_CONNECTION_DATA_SCHEMA_HOST=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_HOST=vdi_control_dev_n
DB_CONNECTION_ENABLED_MICROSPORIDIA=true
DB_CONNECTION_NAME_MICROSPORIDIA=MicrosporidiaDB
DB_CONNECTION_LDAP_MICROSPORIDIA=
DB_CONNECTION_PASS_MICROSPORIDIA=someDBPass
DB_CONNECTION_DATA_SCHEMA_MICROSPORIDIA=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_MICROSPORIDIA=vdi_control_dev_n
DB_CONNECTION_ENABLED_PIROPLASMA=true
DB_CONNECTION_NAME_PIROPLASMA=PiroplasmaDB
DB_CONNECTION_LDAP_PIROPLASMA=
DB_CONNECTION_PASS_PIROPLASMA=someDBPass
DB_CONNECTION_DATA_SCHEMA_PIROPLASMA=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_PIROPLASMA=vdi_control_dev_n
DB_CONNECTION_ENABLED_PLASMO=true
DB_CONNECTION_NAME_PLASMO=PlasmoDB
DB_CONNECTION_LDAP_PLASMO=
DB_CONNECTION_PASS_PLASMO=someDBPass
DB_CONNECTION_DATA_SCHEMA_PLASMO=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_PLASMO=vdi_control_dev_n
DB_CONNECTION_ENABLED_TOXO=true
DB_CONNECTION_NAME_TOXO=ToxoDB
DB_CONNECTION_LDAP_TOXO=
DB_CONNECTION_PASS_TOXO=someDBPass
DB_CONNECTION_DATA_SCHEMA_TOXO=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_TOXO=vdi_control_dev_n
DB_CONNECTION_ENABLED_TRICH=true
DB_CONNECTION_NAME_TRICH=TrichDB
DB_CONNECTION_LDAP_TRICH=
DB_CONNECTION_PASS_TRICH=someDBPass
DB_CONNECTION_DATA_SCHEMA_TRICH=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_TRICH=vdi_control_dev_n
DB_CONNECTION_ENABLED_TRITRYP=true
DB_CONNECTION_NAME_TRITRYP=TriTrypDB
DB_CONNECTION_LDAP_TRITRYP=
DB_CONNECTION_PASS_TRITRYP=someDBPass
DB_CONNECTION_DATA_SCHEMA_TRITRYP=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_TRITRYP=vdi_control_dev_n
DB_CONNECTION_ENABLED_VECTOR=true
DB_CONNECTION_NAME_VECTOR=VectorBase
DB_CONNECTION_LDAP_VECTOR=
DB_CONNECTION_PASS_VECTOR=someDBPass
DB_CONNECTION_DATA_SCHEMA_VECTOR=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_VECTOR=vdi_control_dev_n
DB_CONNECTION_ENABLED_ORTHO=false
DB_CONNECTION_NAME_ORTHO=OrthoMCL
DB_CONNECTION_LDAP_ORTHO=
DB_CONNECTION_PASS_ORTHO=someDBPass
DB_CONNECTION_DATA_SCHEMA_ORTHO=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_ORTHO=vdi_control_dev_n
DB_CONNECTION_ENABLED_CLINEPI=true
DB_CONNECTION_NAME_CLINEPI=ClinEpiDB
DB_CONNECTION_LDAP_CLINEPI=
DB_CONNECTION_PASS_CLINEPI=someDBPass
DB_CONNECTION_DATA_SCHEMA_CLINEPI=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_CLINEPI=vdi_control_dev_n
DB_CONNECTION_ENABLED_MICROBIOME=true
DB_CONNECTION_NAME_MICROBIOME=MicrobiomeDB
DB_CONNECTION_LDAP_MICROBIOME=
DB_CONNECTION_PASS_MICROBIOME=someDBPass
DB_CONNECTION_DATA_SCHEMA_MICROBIOME=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_MICROBIOME=vdi_control_dev_n
DB_CONNECTION_ENABLED_UNIDB=false
DB_CONNECTION_NAME_UNIDB=VEuPathDB
DB_CONNECTION_LDAP_UNIDB=
DB_CONNECTION_PASS_UNIDB=
DB_CONNECTION_DATA_SCHEMA_UNIDB=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_UNIDB=vdi_control_dev_n