diff --git a/src/main/java/org/ecocean/servlet/export/KinalyzerExport.java b/src/main/java/org/ecocean/servlet/export/KinalyzerExport.java
index 2c692dffb5..c18a3367cc 100755
--- a/src/main/java/org/ecocean/servlet/export/KinalyzerExport.java
+++ b/src/main/java/org/ecocean/servlet/export/KinalyzerExport.java
@@ -21,7 +21,12 @@
-//adds spots to a new encounter
+/*
+ * Originally created to support allele export for kinship analysis with the University of Chicago's
+ * Kinalyzer tool (now gone), this export format has been modified to be a generic inividual genetics tool,
+ * allowing for export of individual ID, haplotype, genetic sex, and named allele pairs for any species.
+ *
+ */
public class KinalyzerExport extends HttpServlet{
@@ -48,7 +53,7 @@ public void doPost(HttpServletRequest request, HttpServletResponse response) thr
String context="context0";
context=ServletUtilities.getContext(request);
Shepherd myShepherd = new Shepherd(context);
- myShepherd.setAction("KinalyzerExport");
+ myShepherd.setAction("IndividualSearchGeneticsExport");
//setup data dir
String rootWebappPath = getServletContext().getRealPath("/");
@@ -58,7 +63,7 @@ public void doPost(HttpServletRequest request, HttpServletResponse response) thr
File encountersDir=new File(shepherdDataDir.getAbsolutePath()+"/encounters");
if(!encountersDir.exists()){encountersDir.mkdirs();}
- String kinFilename = "kinalyzer_export_" + request.getRemoteUser() + ".csv";
+ String kinFilename = "individualSearch_genetics_export_" + request.getRemoteUser() + ".csv";
File kinFile = new File(encountersDir.getAbsolutePath()+"/" + kinFilename);
@@ -84,29 +89,47 @@ public void doPost(HttpServletRequest request, HttpServletResponse response) thr
query2Individuals = queryResult2.getResult();
int numSearch2Individuals = query2Individuals.size();
- //now let's start writing output
-
+ //now let's start writing header row
+ String headerRow = "Individual ID, Individual Default Name, Haplotype, Genetic Sex";
//Lines 2+: write the loci
//let's calculate Fst for each of the loci
//iterate through the loci
List Error encountered Please let the webmaster know you encountered an error at: KinalyzerExport servlet.
Kinalyzer CSV File |
Link: http://kinalyzer.cs.uic.edu |
Genetics Export CSV File |
Click here |