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lukeaduncanlukeaduncan
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Finished the rest of the scheduling tables.
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‎.gitignore

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Original file line numberDiff line numberDiff line change
@@ -11,3 +11,5 @@ node_modules/
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outputs/*
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node_modules
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input/vocabulary/valueset/external/
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results/*
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input/tests/results/**

‎input/cql/IMMZD18SMeaslesDose0LTLogic.cql

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/*
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* Library: IMMZD18SMeaslesDose0LT (IMMZ.D18.S.Measles.MCV dose 0 schedule)
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* Schedule Table: Measles-containing vaccine dose 0 (MCV0) schedule Low Transmission
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*/
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library IMMZD18SMeaslesDose0LT
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using FHIR version '4.0.1'
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include FHIRHelpers version '4.0.1'
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include WHOCommon called WC
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include IMMZCommon called Common
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include IMMZConcepts called Concepts
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include IMMZEncounterElements called IE
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include IMMZD2DTMeaslesEncounterElements called Encounter
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parameter Today default Today()
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context Patient
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/*
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@output: MCV0
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@description: Provision of the MCV0
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@trigger: Child's birth
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@triggerDate: "Date of birth"
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*/
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define "MCV0":
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not "MCV0 was administered" and "MCV0 Expiration" after Today
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/*
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@output: MCV0 Create
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@create: In the following situations, a supplementary dose of MCV should be given to infants from 6 months of age:
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• during a measles outbreak as part of intensified service delivery;
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• during campaigns in settings where the risk of measles among infants aged under 9 months remains high (e.g. in endemic countries experiencing regular outbreaks);
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• for internally displaced populations and refugees, and populations in conflict zones;
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• for individual infants at high risk of contracting measles (e.g. contacts of known measles cases or in settings with increased risk of exposure during outbreaks such as day-care facilities);
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• for infants travelling to countries experiencing measles outbreaks;
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• for infants known to be HIV-infected or exposed (i.e. born to a woman infected with HIV).
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*/
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define "MCV0 Create":
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if "MCV0"
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then 'In the following situations, a supplementary dose of MCV should be given to infants from 6 months of age:
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• during a measles outbreak as part of intensified service delivery;
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• during campaigns in settings where the risk of measles among infants aged under 9 months remains high (e.g. in endemic countries experiencing regular outbreaks);
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• for internally displaced populations and refugees, and populations in conflict zones;
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• for individual infants at high risk of contracting measles (e.g. contacts of known measles cases or in settings with increased risk of exposure during outbreaks such as day-care facilities);
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• for infants travelling to countries experiencing measles outbreaks;
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• for infants known to be HIV-infected or exposed (i.e. born to a woman infected with HIV).' + '
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Due Date: ' + ToString("MCV0 Due Date") + '
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Expiration: ' + ToString("MCV0 Expiration")
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else ''
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/*
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@dynamicValue: MCV0 Due Date
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@pseudocode: "Date of birth" + 6 months
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*/
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define "MCV0 Due Date":
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if "MCV0" then WC.LatestOf({
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Patient.birthDate + 6 months,
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IE."Date of Latest Live Attenuated Vaccine" + 4 weeks
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})
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else null
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/*
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@dynanmicValue: MCV0 Overdue
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@pseudocode: To be determined by Member States; however, there is no recommended overdue date and individuals are always eligible to be vaccinated.
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*/
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define "MCV0 Overdue":
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null
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/*
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@dynanmicValue: MCV0 Expiration
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@pseudocode: "Date of birth" + 12 months for countries with low levels of measles transmission
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*/
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define "MCV0 Expiration":
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Patient.birthDate + 12 months
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/*
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@complete: MCV0 was administered
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@pseudocode: Count of vaccines administered (where "Vaccine type" = "Measles-containing vaccines" and "Type of dose" = "Dose 0") = 1
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*/
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define "MCV0 was administered":
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Encounter."MCV0 was administered"
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/*
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@test: Test expected results based on example patients
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*/
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define "Test Validation":
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case
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when Patient.id = '35.Alt6m' then "MCV0"
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when Patient.id = '35.Agt12m' then not "MCV0" // expired
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when Patient.id = '35.Agt6mLVlt4w' then "MCV0"
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when Patient.id = '35.D1' then not "MCV0" // done
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else 'No test case set'
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end

‎input/cql/IMMZD18SMeaslesDose0OTLogic.cql

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/*
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* Library: IMMZD18SMeaslesDose0OT (IMMZ.D18.S.Measles.MCV dose 0 schedule)
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* Schedule Table: Measles-containing vaccine dose 0 (MCV0) schedule for Ongoing Transmission
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*/
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library IMMZD18SMeaslesDose0OT
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using FHIR version '4.0.1'
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include FHIRHelpers version '4.0.1'
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include WHOCommon called WC
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include IMMZCommon called Common
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include IMMZConcepts called Concepts
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include IMMZEncounterElements called IE
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include IMMZD2DTMeaslesEncounterElements called Encounter
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parameter Today default Today()
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context Patient
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/*
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@output: MCV0
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@description: Provision of the MCV0
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@trigger: Child's birth
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@triggerDate: "Date of birth"
29+
*/
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define "MCV0":
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not "MCV0 was administered" and "MCV0 Expiration" after Today
32+
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/*
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@output: MCV0 Create
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@create: In the following situations, a supplementary dose of MCV should be given to infants from 6 months of age:
36+
• during a measles outbreak as part of intensified service delivery;
37+
• during campaigns in settings where the risk of measles among infants aged under 9 months remains high (e.g. in endemic countries experiencing regular outbreaks);
38+
• for internally displaced populations and refugees, and populations in conflict zones;
39+
• for individual infants at high risk of contracting measles (e.g. contacts of known measles cases or in settings with increased risk of exposure during outbreaks such as day-care facilities);
40+
• for infants travelling to countries experiencing measles outbreaks;
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• for infants known to be HIV-infected or exposed (i.e. born to a woman infected with HIV).
42+
*/
43+
define "MCV0 Create":
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if "MCV0"
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then 'In the following situations, a supplementary dose of MCV should be given to infants from 6 months of age:
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• during a measles outbreak as part of intensified service delivery;
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• during campaigns in settings where the risk of measles among infants aged under 9 months remains high (e.g. in endemic countries experiencing regular outbreaks);
48+
• for internally displaced populations and refugees, and populations in conflict zones;
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• for individual infants at high risk of contracting measles (e.g. contacts of known measles cases or in settings with increased risk of exposure during outbreaks such as day-care facilities);
50+
• for infants travelling to countries experiencing measles outbreaks;
51+
• for infants known to be HIV-infected or exposed (i.e. born to a woman infected with HIV).' + '
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Due Date: ' + ToString("MCV0 Due Date") + '
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Expiration: ' + ToString("MCV0 Expiration")
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else ''
55+
56+
/*
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@dynamicValue: MCV0 Due Date
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@pseudocode: "Date of birth" + 6 months
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*/
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define "MCV0 Due Date":
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if "MCV0" then WC.LatestOf({
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Patient.birthDate + 6 months,
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IE."Date of Latest Live Attenuated Vaccine" + 4 weeks
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})
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else null
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/*
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@dynanmicValue: MCV0 Overdue
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@pseudocode: To be determined by Member States; however, there is no recommended overdue date and individuals are always eligible to be vaccinated.
70+
*/
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define "MCV0 Overdue":
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null
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/*
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@dynanmicValue: MCV0 Expiration
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@pseudocode: "Date of birth" + 9 months for countries with ongoing transmission in which the risk of measles mortality remains high
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*/
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define "MCV0 Expiration":
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Patient.birthDate + 9 months
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/*
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@complete: MCV0 was administered
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@pseudocode: Count of vaccines administered (where "Vaccine type" = "Measles-containing vaccines" and "Type of dose" = "Dose 0") = 1
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*/
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define "MCV0 was administered":
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Encounter."MCV0 was administered"
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/*
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@test: Test expected results based on example patients
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*/
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define "Test Validation":
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case
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when Patient.id = '35.Alt6m' then "MCV0"
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when Patient.id = '35.Agt9m' then not "MCV0" // expired
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when Patient.id = '35.Agt6mLVlt4w' then "MCV0"
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when Patient.id = '35.D1' then not "MCV0" // done
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else 'No test case set'
99+
end

‎input/cql/IMMZD18SMeaslesLowTxLogic.cql

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/*
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* Library: IMMZD18SMeaslesLowTx (IMMZ.D18.S.Measles.Low transmission schedule)
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* Schedule Table: Schedule for countries with low levels of measles transmission (countries that provide first dose of measles-containing vaccine (MCV) at 12 months and second dose of MCV at 15 months)
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*/
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library IMMZD18SMeaslesLowTx
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using FHIR version '4.0.1'
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include FHIRHelpers version '4.0.1'
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include WHOCommon called WC
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include IMMZCommon called Common
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include IMMZConcepts called Concepts
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include IMMZEncounterElements called IE
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include IMMZD2DTMeaslesEncounterElements called Encounter
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parameter Today default Today()
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context Patient
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/*
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@output: MCV dose 1 (MCV1)
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@description: Provision of MCV1 from the primary series
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@trigger: Child's birth
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@triggerDate: "Date of birth"
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*/
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define "MCV dose 1 (MCV1)":
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not "MCV1 was administered"
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/*
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@output: MCV dose 1 (MCV1) Create
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@create: The client is due for MCV1 if the client is at least 12 months
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*/
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define "MCV dose 1 (MCV1) Create":
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if "MCV dose 1 (MCV1)"
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then 'The client is due for MCV1 if the client is at least 12 months' + '
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Due Date: ' + ToString("MCV dose 1 (MCV1) Due Date")
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else ''
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/*
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@dynamicValue: MCV dose 1 (MCV1) Due Date
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@pseudocode: "Date of birth" + 12 months
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*/
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define "MCV dose 1 (MCV1) Due Date":
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if "MCV dose 1 (MCV1)" then WC.LatestOf({
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Patient.birthDate + 12 months,
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IE."Date of Latest Live Attenuated Vaccine" + 4 weeks
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})
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else null
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/*
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@dynanmicValue: MCV dose 1 (MCV1) Overdue
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@pseudocode: To be determined by Member States; however, there is no recommended overdue date and individuals are always eligible to be vaccinated.
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*/
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define "MCV dose 1 (MCV1) Overdue":
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null
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/*
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@dynanmicValue: MCV dose 1 (MCV1) Expiration
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@pseudocode: To be determined by Member States; however, there is no recommended expiration date and individuals are always eligible to be vaccinated.
64+
*/
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define "MCV dose 1 (MCV1) Expiration":
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null
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/*
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@complete: MCV1 was administered
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@pseudocode: Count of vaccines administered (where "Vaccine type" = "Measles-containing vaccines" and "Type of dose" = "Primary series") = 1
71+
*/
72+
define "MCV1 was administered":
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Encounter."MCV1 was administered"
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/*
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@output: MCV2
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@description: Provision of MCV2 from the primary series
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@trigger: MCV1 was administered
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Count of vaccines administered (where "Vaccine type" = "Measles-containing vaccines" and "Type of dose" = "Primary series") = 1
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@triggerDate: "Date of birth"
81+
*/
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define "MCV2":
83+
not "MCV2 was administered. The primary series has been completed"
84+
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/*
86+
@output: MCV2 Create
87+
@create: The client is due for MCV2 if the client is at least 15 months.
88+
*/
89+
define "MCV2 Create":
90+
if "MCV2"
91+
then 'The client is due for MCV2 if the client is at least 15 months.' + '
92+
Due Date: ' + ToString("MCV2 Due Date")
93+
else ''
94+
95+
/*
96+
@dynamicValue: MCV2 Due Date
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@pseudocode: "Date of birth" + 15 months
98+
*/
99+
define "MCV2 Due Date":
100+
if "MCV2" then WC.LatestOf({
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Patient.birthDate + 15 months,
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IE."Date of Latest Live Attenuated Vaccine" + 4 weeks
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})
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else null
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/*
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@dynanmicValue: MCV2 Overdue
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@pseudocode: To be determined by Member States; however, there is no recommended overdue date and individuals are always eligible to be vaccinated.
109+
*/
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define "MCV2 Overdue":
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null
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/*
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@dynanmicValue: MCV2 Expiration
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@pseudocode: To be determined by Member States; however, there is no recommended expiration date and individuals are always eligible to be vaccinated.
116+
*/
117+
define "MCV2 Expiration":
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null
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/*
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@complete: MCV2 was administered. The primary series has been completed
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@pseudocode: "Completed the primary vaccination series" = TRUE (where "Vaccine type" = "Measles-containing vaccines")
123+
*/
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define "MCV2 was administered. The primary series has been completed":
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Encounter."MCV2 was administered"
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127+
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/*
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@test: Test expected results based on example patients
130+
*/
131+
define "Test Validation":
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case
133+
when Patient.id = '21.Alt12m' then "MCV dose 1 (MCV1)"
134+
when Patient.id = '21.Agt12m' then "MCV dose 1 (MCV1)"
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when Patient.id = '21.Agt12mLVlt4w' then "MCV dose 1 (MCV1)"
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when Patient.id = '22.D1Alt15m' then "MCV2"
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when Patient.id = '22.D1Agt15mLVlt4w' then "MCV2"
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when Patient.id = '22.D2' then not "MCV2" and not "MCV dose 1 (MCV1)"
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else 'No test case set'
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end

‎input/cql/IMMZD18SMeaslesOngoingTxLogic.cql

+2-2
Original file line numberDiff line numberDiff line change
@@ -45,7 +45,7 @@ Due Date: ' + ToString("MCV dose 1 (MCV1) Due Date")
4545
@pseudocode: "Date of birth" + 9 months
4646
*/
4747
define "MCV dose 1 (MCV1) Due Date":
48-
if "MCV dose 1 (MCV1)" then Max({
48+
if "MCV dose 1 (MCV1)" then WC.LatestOf({
4949
Patient.birthDate + 9 months,
5050
IE."Date of Latest Live Attenuated Vaccine" + 4 weeks
5151
})
@@ -97,7 +97,7 @@ Due Date: ' + ToString("MCV2 Due Date")
9797
@pseudocode: "Date of birth" + 15 months
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*/
9999
define "MCV2 Due Date":
100-
if "MCV2" then Max({
100+
if "MCV2" then WC.LatestOf({
101101
Patient.birthDate + 15 months,
102102
IE."Date of Latest Live Attenuated Vaccine" + 4 weeks
103103
})

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