Fixes Open-Systems-Pharmacology#13 update coverage: (Open-Systems-Pharmacology#15)

* Fixes Open-Systems-Pharmacology#13 update coverage:

* Fixes Open-Systems-Pharmacology#13 update coverage:

Author: msevestre

README.md

@@ -2,11 +2,43 @@
 
 Collection of rake tasks used during build.
 
+## nuget_push
+
+The task `list_nuget_packages` is used to list of Open Systems Pharmacology packages that are not updated in nuget.org. That is useful in the case where nuget developers are pushing packages to the Appveyor feed and a stable version of all the packages should be copied to nuget and the packages should not be rebuilt.
+
+### Usage:
+
+```
+rake list_nuget_packages[<path to the packages folder>]
+```
+
+### Examples
+
+```
+ rake list_nuget_packages[C:/projects/PK-Sim]
+ rake list_nuget_packages[C:/projects/MoBi]
+ rake list_nuget_packages[C:/projects/OSPSUite.Core]
+```
+
+This will go over all `csproj` in the folder and find nupkg files to consider updating on Nuget.org.
+
+The nupkg files will be scanned for the nuspec. If the nuspec file indicates that the owner is Open-Systems-Pharmacology, then the version and id will be read and the comparable package will be found on nuget.org.
+
+If the version for that package id is not found, then the script will list the nupkg file to be pushed to nuget.org
+
+Required gems are
+
+- rubyzip
+- xml-simple
+
 ## Code of conduct
+
 Everyone interacting in the Open Systems Pharmacology community (codebases, issue trackers, chat rooms, mailing lists etc...) is expected to follow the Open Systems Pharmacology [code of conduct](https://github.com/Open-Systems-Pharmacology/Suite/blob/master/CODE_OF_CONDUCT.md).
 
 ## Contribution
+
 We encourage contribution to the Open Systems Pharmacology community. Before getting started please read the [contribution guidelines](https://github.com/Open-Systems-Pharmacology/Suite/blob/master/CONTRIBUTING.md). If you are contributing code, please be familiar with the [coding standard](https://github.com/Open-Systems-Pharmacology/Suite/blob/master/CODING_STANDARDS.md).
 
 ## License
+
 build-scripts is released under the [GPLv2 License](LICENSE).

copy-dependencies.rb

@@ -8,7 +8,7 @@
 # =>   copy_native_dll
 # => end
 
-def copy_depdencies(source_dir, target_dir, &block)
+def copy_dependencies(source_dir, target_dir, &block)
 	dependecyManager = DependencyManager.new(source_dir, target_dir)
 	dependecyManager.instance_eval(&block)
 	dependecyManager.perform_file_copy
@@ -48,7 +48,7 @@ def copy_files(subfolder, file_extensions)
 	def perform_file_copy
 		retrieve_target_dir do |target_dir|
 			FileUtils.mkdir_p target_dir
-			copy_depdencies_to target_dir
+			copy_dependencies_to target_dir
 		end	
 	end
 
@@ -67,7 +67,7 @@ def method_missing(method_name, *args)
 
 	private 
 
-	def copy_depdencies_to(target_dir)
+	def copy_dependencies_to(target_dir)
 		dependencies.each do |dep|
 			Dir.glob(dep).each do |f| 
 				puts "Copying #{f} to #{target_dir}".green

coverage.rb

@@ -6,7 +6,7 @@ def self.cover(filter_array, targetProjects)
     openCover = Dir.glob("packages/OpenCover.*/tools/OpenCover.Console.exe").first
     targetArgs = testProjects.join(" ")
 
-    Utils.run_cmd(openCover, ["-register:user", "-target:nunit3-console.exe", "-targetargs:#{targetArgs}", "-output:OpenCover.xml", "-filter:#{filter_array.join(" ")}", "-excludebyfile:*.Designer.cs"])
+    Utils.run_cmd(openCover, ["-register:path64", "-target:nunit3-console.exe", "-targetargs:#{targetArgs}", "-output:OpenCover.xml", "-filter:#{filter_array.join(" ")}", "-excludebyfile:*.Designer.cs"])
     Utils.run_cmd("codecov", ["-f", "OpenCover.xml"])
   end
-end
+end

nuget_push.rb

@@ -0,0 +1,83 @@
+require 'zip'
+require 'xmlsimple'
+require 'open-uri'
+
+def print_all_packages_to_upload_from(directory)
+  packages = all_open_pharma_packages(directory)
+  
+  packages.each do |id, package|
+    if(!nuget_has_version(package))
+      push_to_nuget(package)
+    end
+  end
+end
+
+
+def all_open_pharma_packages(directory)
+  projects = Dir.glob(File.join(directory, "**", "*.csproj"));
+  
+  packages = {};
+  projects.each do |path|
+    project = Project.new path
+    project.packages.each do |package|
+      package_id = package.id
+      if(packages.key?(package_id))
+        existing_version = packages[package_id].version;
+        if(existing_version!=package.version)
+          raise "Different version found for package #{package_id}: (#{existing_version} vs #{package.version})"
+        end
+      else
+        packages[package_id] = package
+      end
+    end
+  end
+  
+  return packages;
+end
+
+def nuget_has_version(package)
+  begin  
+    file = open("https://www.nuget.org/packages/#{package.id}")
+    contents = file.read
+    contents.include? package.version
+  rescue
+    false
+  end
+end
+
+def push_to_nuget(package)
+  #todo make this execute
+  #	puts "nuget push #{package.id} -apikey somekey -Source https://www.nuget.org/api/v2/package"
+  puts "Package to update: #{package.id} with version #{package.version}"
+end
+
+class Project
+  attr_reader :packages 
+  
+  def initialize(path)
+    @path = path
+    @packages = []
+    project_xml = XmlSimple.xml_in(path)
+    project_xml["ItemGroup"].each do |item_group|
+      pagckage_ref = item_group["PackageReference"];
+      next if !pagckage_ref
+      
+      pagckage_ref.each do |package|
+        id = package["Include"]
+        next if !id.start_with?("OSPSuite")
+        packages.push Package.new(id, package["Version"])
+      end
+    end
+  end
+end
+
+class Package 
+  def initialize(id, version)
+    @version = version
+    @id = id
+  end
+  
+  attr_reader :id 
+  
+  attr_reader :version
+end

rakefile.rb

@@ -0,0 +1,5 @@
+require_relative 'nuget_push'
+
+task :list_nuget_packages, [:directory]  do |cmd, args|
+  print_all_packages_to_upload_from args.directory
+end

smartxls.rb

@@ -6,7 +6,7 @@ def self.update_smart_xls(source_dir, smart_xls_package, sx_version)
     unzip_dir = File.dirname(smart_xls_package)
     command_line = %W[e #{smart_xls_package} -o#{unzip_dir}]
     Utils.run_cmd('7z', command_line)
-    copy_depdencies unzip_dir, source_dir do
+    copy_dependencies unzip_dir, source_dir do
       copy_file 'SX.dll'
     end