ubuntu.def

#
# Singularity definition file for DataLad
# Pierre Rioux, pierre.rioux@mcgill.ca, February 2021
#

Bootstrap: library
From: ubuntu:20.04

%post
    # Configure package repo for neurodebian
    apt-get update -y -qq
    apt-get install -y gnupg wget curl ca-certificates
    apt-key adv --recv-keys --keyserver hkps://keys.openpgp.org:443 0xA5D32F012649A5A9
    wget -O/etc/apt/sources.list.d/neurodebian.sources.list http://neuro.debian.net/lists/focal.de-fzj.libre
    apt-get update -y -qq

    # Upgrade all packages
    apt-get upgrade -y

    # Install DataLad
    echo yes | DEBIAN_FRONTEND=noninteractive apt-get install -f -y neurodebian
    apt-get update -y -qq
    DEBIAN_FRONTEND=noninteractive apt-get install -f -y datalad
    apt-get upgrade -y
    apt-get upgrade -y datalad

    # Cleanup
    apt-get autoremove -y
    apt-get purge
    apt-get clean

%runscript
    datalad "$@"

%labels
    Author          pierre.rioux@mcgill.ca
    Version         v1.0.0
    DataladVersion  0.11.2
    GitAnnexVersion 7.20190129

%help
    This container provides the Datalad tool along with other utilites (git, git-annex)