frag-struc.yaml

Name: RNA structure by fragmentation frequency
Description: "The fragSTRUC project devises a software to extract RNA secondary structure information from Illumina datasets, based on divalent ions in standard RNA-seq library preparation fragmenting sequences at non-base-paired regions of RNA."
Documentation: https://github.com/yuukiiwa/RNA_structure_by_fragmentation_frequency
Contact: "[fragSTRUC team](https://github.com/yuukiiwa/RNA_structure_by_fragmentation_frequency)"
ManagedBy: "The Genome Institute of Singapore (https://www.a-star.edu.sg/gis) and UMass Chan Medical School's RNA Therapeutics Institute (https://www.umassmed.edu/rti/)"
UpdateFrequency: Datasets will be updated periodically as additional data is generated.
Tags:
  - RNA structure
  - genomic
  - transcriptomics
  - life sciences
  - Illumina sequencing
  - bulk RNA sequencing
  - bioinformatics
  - bigwig
  - aws-pds
License: "[CC BY 4.0](https://creativecommons.org/licenses/by/4.0/)"
Citation: "In addition, please cite Yuk Kei Wan and Leonard Schärfen Hidden structural information in RNA sequencing data."
Resources: 
  - Description: RNA structure by fragmentation frequency
    ARN: arn:aws:s3:::frag-struc
    Region: ap-southeast-1
    Type: S3 Bucket 
    Explore: 
    - '[Browse Bucket](http://frag-struc.s3-website-ap-southeast-1.amazonaws.com/)'
DataAtWork:
  Tutorials: 
    - Title: Accessing the fragSTRUC dataset on AWS
      URL: https://github.com/yuukiiwa/RNA_structure_by_fragmentation_frequency/blob/main/README.md
      AuthorName: Yuk Kei Wan and Leonard Schärfen
  Tools & Applications:
    - Title: "fragSTRUC: RNA structure by fragmentation frequency"
      URL: https://github.com/lschaerfen/fragstruc
      AuthorName: Yuk Kei Wan and Leonard Schärfen
  Publications:
    - Title: Hidden structural information in RNA sequencing data.
      URL:  In Preparation
      AuthorName: Yuk Kei Wan and Leonard Schärfen