Add carsus #478
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| --- | |
| name: Test | |
| permissions: | |
| contents: read | |
| on: | |
| push: | |
| merge_group: | |
| schedule: | |
| - cron: 0 13 * * 1 | |
| workflow_dispatch: | |
| jobs: | |
| lint: | |
| name: Format, lint, and type check | |
| runs-on: ubuntu-24.04 | |
| env: | |
| RUFF_OUTPUT_FORMAT: github | |
| UV_FROZEN: 1 | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v6 | |
| with: | |
| activate-environment: true | |
| - name: Install artisatomic | |
| run: | | |
| uv sync | |
| source .venv/bin/activate | |
| uv pip install --compile-bytecode --editable . | |
| - name: Run Ruff | |
| if: always() | |
| run: | | |
| uv run -- ruff --version | |
| uv run -- ruff check --exit-non-zero-on-fix --no-fix | |
| - name: Run Ruff Format | |
| if: always() | |
| run: uv run -- ruff format --check --exit-non-zero-on-format | |
| - name: Run ty | |
| if: always() | |
| run: uv run -- ty check | |
| - name: Run pyright | |
| if: always() | |
| run: uv run -- pyright --warnings | |
| - name: Run mypy | |
| if: always() | |
| run: uv run -- mypy | |
| - name: Cache prek | |
| uses: actions/cache@v5 | |
| with: | |
| path: ~/.cache/prek | |
| key: prek-3-${{ runner.os }}${{ runner.arch }}-${{ hashFiles('.pre-commit-config.yaml') }}-${{ github.run_id }} | |
| restore-keys: | | |
| prek-3-${{ runner.os }}${{ runner.arch }}-${{ hashFiles('.pre-commit-config.yaml') }}- | |
| prek-3-${{ runner.os }}${{ runner.arch }}- | |
| - name: Run prek | |
| if: always() | |
| run: | | |
| prek install | |
| prek run --all-files --show-diff-on-failure --color=always | |
| pytest: | |
| runs-on: ubuntu-24.04 | |
| env: | |
| UV_FROZEN: 1 | |
| ARTISATOMIC_TESTMODE: 1 | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v6 | |
| with: | |
| activate-environment: true | |
| - name: Install artisatomic | |
| run: | | |
| uv sync | |
| uv pip install --compile-bytecode --editable . | |
| - name: Cache CMFGEN atomic data | |
| uses: actions/cache@v4 | |
| id: cache-cmfgendata | |
| with: | |
| path: atomic-data-hillier/atomic_21jun23/** | |
| key: atomic-data-hillier/atomic_data_21jun23/files | |
| - name: Download/extract CMFGEN atomic data | |
| if: ${{ steps.cache-cmfgendata.outputs.cache-hit != 'true' }} | |
| working-directory: atomic-data-hillier/ | |
| run: source ./setup_cmfgen_data.sh | |
| - name: Test with pytest | |
| run: uv run python3 -m pytest | |
| tests: | |
| strategy: | |
| matrix: | |
| testname: [cmfgen, floers25, jplt, kurucz, qub] | |
| fail-fast: false | |
| runs-on: ubuntu-24.04 | |
| env: | |
| UV_FROZEN: 1 | |
| ARTISATOMIC_TESTMODE: 1 | |
| timeout-minutes: 45 | |
| name: test ${{ matrix.testname }} | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v6 | |
| with: | |
| activate-environment: true | |
| - name: Install artisatomic | |
| run: | | |
| uv sync | |
| uv pip install --compile-bytecode --editable . | |
| - name: Cache CMFGEN atomic data | |
| uses: actions/cache@v4 | |
| id: cache-cmfgendata | |
| with: | |
| path: atomic-data-hillier/atomic_21jun23/** | |
| key: atomic-data-hillier/atomic_data_21jun23/files | |
| - name: Download/extract CMFGEN atomic data | |
| if: ${{ steps.cache-cmfgendata.outputs.cache-hit != 'true' }} | |
| working-directory: atomic-data-hillier/ | |
| run: source ./setup_cmfgen_data.sh | |
| - name: Cache JPLT atomic data | |
| if: matrix.testname == 'jplt' | |
| uses: actions/cache@v4 | |
| id: cache-jpltdata | |
| with: | |
| path: atomic-data-tanaka-jplt/data_v2.1/** | |
| key: atomic-data-tanaka-jplt-files-v2.1 | |
| - name: Download/extract JPLT atomic data | |
| if: matrix.testname == 'jplt' | |
| working-directory: atomic-data-tanaka-jplt/ | |
| run: source ./setup_jplt_data.sh | |
| - name: Extract Floers25 atomic data | |
| if: matrix.testname == 'floers25' | |
| working-directory: atomic-data-floers25/ | |
| run: tar -xJvf testdata.tar.xz | |
| - name: Extract QUB test data | |
| if: matrix.testname == 'qub' | |
| working-directory: atomic-data-qub/ | |
| run: rsync -av co_tyndall_test_sample/ co_tyndall/ | |
| - name: Generate artis atomic data files | |
| run: | | |
| cp tests/${{ matrix.testname }}/artisatomicionhandlers.json . | |
| uv run makeartisatomicfiles -output_folder tests/${{ matrix.testname }}/output | |
| - name: Checksum output files | |
| working-directory: tests/${{ matrix.testname }}/output | |
| run: | | |
| cat compositiondata.txt | |
| cat atomic_data_logs/*.json | |
| echo | |
| md5sum *.txt atomic_data_logs/*.txt | |
| md5sum -c ../checksums.txt | |
| - name: tar and zip output files | |
| if: always() | |
| run: | | |
| tar -cvzf artis_files_${{ matrix.testname }}.tar.gz tests/${{ matrix.testname }}/output/* | |
| - name: Upload output files | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: artis_files_${{ matrix.testname }}.tar.gz | |
| path: artis_files_${{ matrix.testname }}.tar.gz |