use correct fixed_file as output

LindoNkambule · LindoNkambule · commit c125e587b8dc · 2025-02-03T11:55:46.000-05:00
diff --git a/gwaspy/check_alleles/check_alleles.py b/gwaspy/check_alleles/check_alleles.py
@@ -91,7 +91,7 @@ def fix_alleles(
             """
         )
 
-        b.write_output(j.stats,
+        b.write_output(j.fixed_file,
                        f'{out_dir}/check_alleles/{output_name}.alleles.fixed')
 
         return j

Original file line number	Diff line number	Diff line change
`@@ -91,7 +91,7 @@ def fix_alleles(`
`91`	`91`	`"""`
`92`	`92`	`)`
`93`	`93`
`94`		`- b.write_output(j.stats,`
	`94`	`+ b.write_output(j.fixed_file,`
`95`	`95`	`f'{out_dir}/check_alleles/{output_name}.alleles.fixed')`
`96`	`96`
`97`	`97`	`return j`