diff --git a/src/CHANGES.md b/src/CHANGES.md index 329d328f8c..087368ffea 100644 --- a/src/CHANGES.md +++ b/src/CHANGES.md @@ -1,21 +1,24 @@ # Changelog -## [v1.9.0](https://bids-specification.readthedocs.io/en/v1.9.0) (2023-11-20) +## [v1.9.0](https://github.com/bids-standard/bids-specification/tree/v1.9.0) (2023-11-20) +- \[FIX] mention phenotype dir in folder structure [#1644](https://github.com/bids-standard/bids-specification/pull/1644) ([Remi-Gau](https://github.com/Remi-Gau)) - \[ENH] add `ElectricalStimulation` and `\*Parameters` metadata to MEEG jsons [#1638](https://github.com/bids-standard/bids-specification/pull/1638) ([sappelhoff](https://github.com/sappelhoff)) -- Fix years and degrees Units and unit to be singular to match the rest [#1631](https://github.com/bids-standard/bids-specification/pull/1631) ([yarikoptic](https://github.com/yarikoptic)) +- \[FIX] years and degrees Units and unit to be singular to match the rest [#1631](https://github.com/bids-standard/bids-specification/pull/1631) ([yarikoptic](https://github.com/yarikoptic)) - \[FIX] Hierarchical Event Descriptors (HED) page update [#1623](https://github.com/bids-standard/bids-specification/pull/1623) ([effigies](https://github.com/effigies)) -- FIX: Do not require notch frequencies to be parsed as numbers, accommodating multiples [#1605](https://github.com/bids-standard/bids-specification/pull/1605) ([effigies](https://github.com/effigies)) +- \[ENH] Add `descriptions.tsv` file relating to the `desc-\` entity [#1613](https://github.com/bids-standard/bids-specification/pull/1613) ([CPernet](https://github.com/CPernet)) +- \[FIX] Do not require notch frequencies to be parsed as numbers, accommodating multiples [#1605](https://github.com/bids-standard/bids-specification/pull/1605) ([effigies](https://github.com/effigies)) - \[ENH] Allow Levels field of column descriptions to be objects with TermURLs for each level [#1603](https://github.com/bids-standard/bids-specification/pull/1603) ([Remi-Gau](https://github.com/Remi-Gau)) - \[ENH] Add optional low_cutoff and high_cutoff columns for fnirs channels.tsv [#1597](https://github.com/bids-standard/bids-specification/pull/1597) ([Remi-Gau](https://github.com/Remi-Gau)) -- Recommend SliceTiming if MRAcquisitionType is "2D" [#1594](https://github.com/bids-standard/bids-specification/pull/1594) ([tsalo](https://github.com/tsalo)) +- \[FIX] Recommend SliceTiming if MRAcquisitionType is "2D" [#1594](https://github.com/bids-standard/bids-specification/pull/1594) ([tsalo](https://github.com/tsalo)) - \[ENH] Add Level objects to channels.json for motion [#1591](https://github.com/bids-standard/bids-specification/pull/1591) ([effigies](https://github.com/effigies)) - \[ENH] Add "chunk" entity to MRI datatype [#1586](https://github.com/bids-standard/bids-specification/pull/1586) ([valosekj](https://github.com/valosekj)) - \[SCHEMA]\[ENH] Remove atlas entity and replace it with seg in prep of BEP038 [#1579](https://github.com/bids-standard/bids-specification/pull/1579) ([melanieganz](https://github.com/melanieganz)) +- \[FIX] Correct PDw suffix description [#1578](https://github.com/bids-standard/bids-specification/pull/1578) ([jeremie-fouquet](https://github.com/jeremie-fouquet)) - \[FIX] improve longitudinal example [#1576](https://github.com/bids-standard/bids-specification/pull/1576) ([Remi-Gau](https://github.com/Remi-Gau)) -- Adds Kim Ray as maintainer. [#1571](https://github.com/bids-standard/bids-specification/pull/1571) ([arokem](https://github.com/arokem)) +- \[INFRA] Adds Kim Ray as maintainer. [#1571](https://github.com/bids-standard/bids-specification/pull/1571) ([arokem](https://github.com/arokem)) - \[ENH] Allow for "echo" entity to be used with T1w and other nonparametric anatomical suffixes [#1570](https://github.com/bids-standard/bids-specification/pull/1570) ([yarikoptic](https://github.com/yarikoptic)) -- Update `templates` in modality-agnostic-files [#1564](https://github.com/bids-standard/bids-specification/pull/1564) ([sappelhoff](https://github.com/sappelhoff)) +- \[FIX] Update `templates` in modality-agnostic-files [#1564](https://github.com/bids-standard/bids-specification/pull/1564) ([sappelhoff](https://github.com/sappelhoff)) - \[FIX] Clarify that electrodes.tsv is optional for MEG, for use with simultaneous (i)EEG [#1555](https://github.com/bids-standard/bids-specification/pull/1555) ([effigies](https://github.com/effigies)) - \[ENH] Allow UNKNOWN and NONE ContrastBolusIngredients [#1547](https://github.com/bids-standard/bids-specification/pull/1547) ([Remi-Gau](https://github.com/Remi-Gau)) - \[FIX] Update links to BIDS examples [#1545](https://github.com/bids-standard/bids-specification/pull/1545) ([Remi-Gau](https://github.com/Remi-Gau)) @@ -23,20 +26,19 @@ - \[ENH] add "visual correction" and "head stabilization" metadata [#1539](https://github.com/bids-standard/bids-specification/pull/1539) ([Remi-Gau](https://github.com/Remi-Gau)) - \[ENH] Clarify meaning of raw vs derivative datasets [#1537](https://github.com/bids-standard/bids-specification/pull/1537) ([CPernet](https://github.com/CPernet)) - \[FIX] match subject label in folder and filename in func example [#1536](https://github.com/bids-standard/bids-specification/pull/1536) ([Remi-Gau](https://github.com/Remi-Gau)) -- FIX: Trail MEG directory formats with `/` [#1534](https://github.com/bids-standard/bids-specification/pull/1534) ([effigies](https://github.com/effigies)) +- \[FIX] Trail MEG directory formats with `/` [#1534](https://github.com/bids-standard/bids-specification/pull/1534) ([effigies](https://github.com/effigies)) - \[ENH] Permit CITATION.cff as structured alternative to some dataset_description fields [#1525](https://github.com/bids-standard/bids-specification/pull/1525) ([effigies](https://github.com/effigies)) - \[FIX] Add missing column description in physio example [#1514](https://github.com/bids-standard/bids-specification/pull/1514) ([sappelhoff](https://github.com/sappelhoff)) - \[ENH] Clarify that data files must be uniquely identified by entities/suffix [#1508](https://github.com/bids-standard/bids-specification/pull/1508) ([sappelhoff](https://github.com/sappelhoff)) -- DOC: Auto-generate full API docs [#1505](https://github.com/bids-standard/bids-specification/pull/1505) ([effigies](https://github.com/effigies)) - \[INFRA] Publish schema tools API docs to additional ReadTheDocs site [#1491](https://github.com/bids-standard/bids-specification/pull/1491) ([bendhouseart](https://github.com/bendhouseart)) - \[FIX] Remove references to unspecified aslcontext.json [#1485](https://github.com/bids-standard/bids-specification/pull/1485) ([Remi-Gau](https://github.com/Remi-Gau)) +- ENH: Define channel column for events and Delimiter field for column descriptions [#1483](https://github.com/bids-standard/bids-specification/pull/1483) ([effigies](https://github.com/effigies)) - \[FIX] Revert index (entity format) definition to be a non-negative number, permitting zero [#1482](https://github.com/bids-standard/bids-specification/pull/1482) ([TheChymera](https://github.com/TheChymera)) -- ENH: Add version list to schema.meta and a warning on unknown BIDSVersion [#1472](https://github.com/bids-standard/bids-specification/pull/1472) ([effigies](https://github.com/effigies)) - \[FIX] Clean up qMRI RB1COR notes [#1465](https://github.com/bids-standard/bids-specification/pull/1465) ([lukeje](https://github.com/lukeje)) - \[ENH] Allow fractional seconds in StartTime [#1459](https://github.com/bids-standard/bids-specification/pull/1459) ([sappelhoff](https://github.com/sappelhoff)) - \[MISC] consistently list filename templates; `ext` --> `extension`; `\_photo.jpg` --> `\_photo.\` [#1458](https://github.com/bids-standard/bids-specification/pull/1458) ([sappelhoff](https://github.com/sappelhoff)) - \[FIX] Demote `sample` and `value` columns in `events.tsv` from OPTIONAL to arbitrary [#1457](https://github.com/bids-standard/bids-specification/pull/1457) ([sappelhoff](https://github.com/sappelhoff)) -- ENH: Clarify shape of PDT2 images and recommend acq entity for split PDw/T2w images [#1448](https://github.com/bids-standard/bids-specification/pull/1448) ([effigies](https://github.com/effigies)) +- \[ENH] Clarify shape of PDT2 images and recommend acq entity for split PDw/T2w images [#1448](https://github.com/bids-standard/bids-specification/pull/1448) ([effigies](https://github.com/effigies)) - \[ENH] clarify guiding principles for requirement levels [#1444](https://github.com/bids-standard/bids-specification/pull/1444) ([sappelhoff](https://github.com/sappelhoff)) - \[FIX] Clarify that dataset_description.Genetics object is required for genetics data [#1442](https://github.com/bids-standard/bids-specification/pull/1442) ([sappelhoff](https://github.com/sappelhoff)) - \[ENH] Clarify that BIDS specification is in American English [#1439](https://github.com/bids-standard/bids-specification/pull/1439) ([yarikoptic](https://github.com/yarikoptic)) @@ -45,30 +47,27 @@ - \[FIX] Rename `channels.tsv` column: `orientation\_component` to `component` [#1417](https://github.com/bids-standard/bids-specification/pull/1417) ([sjeung](https://github.com/sjeung)) - \[ENH] Some missing docstrings for bidsschematools [#1413](https://github.com/bids-standard/bids-specification/pull/1413) ([anibalsolon](https://github.com/anibalsolon)) - \[FIX] fixing some minor issues introduced recently [#1411](https://github.com/bids-standard/bids-specification/pull/1411) ([yarikoptic](https://github.com/yarikoptic)) -- SCHEMA: Implement some fairly easy rules [#1410](https://github.com/bids-standard/bids-specification/pull/1410) ([effigies](https://github.com/effigies)) -- \[REF] refactor institution and task tables [#1397](https://github.com/bids-standard/bids-specification/pull/1397) ([Remi-Gau](https://github.com/Remi-Gau)) - \[ENH] Add paragraph about richness versus distinctness in filenames [#1392](https://github.com/bids-standard/bids-specification/pull/1392) ([CPernet](https://github.com/CPernet)) - \[FIX] Updated HED score library version [#1390](https://github.com/bids-standard/bids-specification/pull/1390) ([VisLab](https://github.com/VisLab)) - \[FIX] Updated links and fixed typos in hed appendix [#1383](https://github.com/bids-standard/bids-specification/pull/1383) ([VisLab](https://github.com/VisLab)) - \[ENH] add screen parameters metadata [#1369](https://github.com/bids-standard/bids-specification/pull/1369) ([Remi-Gau](https://github.com/Remi-Gau)) -- RF: allow for any "recording" file to be listed in \_scans.tsv not just "neural recording" [#1368](https://github.com/bids-standard/bids-specification/pull/1368) ([yarikoptic](https://github.com/yarikoptic)) +- \[MISC] allow for any "recording" file to be listed in \_scans.tsv not just "neural recording" [#1368](https://github.com/bids-standard/bids-specification/pull/1368) ([yarikoptic](https://github.com/yarikoptic)) - \[FIX] wrong usage of DOI in SourceDatasets example [#1361](https://github.com/bids-standard/bids-specification/pull/1361) ([sappelhoff](https://github.com/sappelhoff)) - \[FIX] make references to Neuromag/Elekta/MEGIN consistent [#1359](https://github.com/bids-standard/bids-specification/pull/1359) ([sappelhoff](https://github.com/sappelhoff)) -- \[DOC] link to steering group section on bids website [#1358](https://github.com/bids-standard/bids-specification/pull/1358) ([Remi-Gau](https://github.com/Remi-Gau)) - \[ENH] Add reference for ASL BEP [#1357](https://github.com/bids-standard/bids-specification/pull/1357) ([Remi-Gau](https://github.com/Remi-Gau)) - \[FIX] remove redundant entity definitions in behavioral page [#1356](https://github.com/bids-standard/bids-specification/pull/1356) ([Remi-Gau](https://github.com/Remi-Gau)) - \[FIX] add missing processing entity for MEG physio files and render physio filename templates for fNIRS [#1355](https://github.com/bids-standard/bids-specification/pull/1355) ([Remi-Gau](https://github.com/Remi-Gau)) - \[ENH] Recommend gzip header fields be set to empty values [#1349](https://github.com/bids-standard/bids-specification/pull/1349) ([kousu](https://github.com/kousu)) - \[FIX] clarify TriggerChannelCount and TRIG type [#1342](https://github.com/bids-standard/bids-specification/pull/1342) ([sappelhoff](https://github.com/sappelhoff)) - \[ENH] Add qMRI fieldmap filename templates [#1336](https://github.com/bids-standard/bids-specification/pull/1336) ([Remi-Gau](https://github.com/Remi-Gau)) -- ENH: Introduce GIFTI formats in derivatives [#1333](https://github.com/bids-standard/bids-specification/pull/1333) ([effigies](https://github.com/effigies)) +- \[ENH] Introduce GIFTI formats in derivatives [#1333](https://github.com/bids-standard/bids-specification/pull/1333) ([effigies](https://github.com/effigies)) - \[ENH] Add ParallelReductionFactorOutOfPlane to MRI metadata [#1221](https://github.com/bids-standard/bids-specification/pull/1221) ([lukeje](https://github.com/lukeje)) -- \[ENH]\[SCHEMA] Adding an OPTIONAL \_task-\