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fixed taxonomy field in wormbase gene
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wormbase/wormbase.php

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Original file line numberDiff line numberDiff line change
@@ -155,7 +155,6 @@ function geneIDs()
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if($l[0] == '#') continue;
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// taxon, gene id, symbol, cosmid, status
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$data = explode(",",trim($l));
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if($first) {
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if(($c = count($data) != 5)) {
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trigger_error("WormBase function expects 5 fields, found $c!".PHP_EOL, E_USER_WARNING);
@@ -170,7 +169,7 @@ function geneIDs()
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parent::addRDF(
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parent::describeIndividual($id, $label, parent::getVoc()."Gene").
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parent::describeClass(parent::getVoc()."Gene", "Wormbase Gene").
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parent::triplify($id, parent::getVoc()."taxonomy", "taxonomy:".$data[1]).
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parent::triplify($id, parent::getVoc()."x-taxonomy", "taxonomy:".$data[0]).
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parent::triplifyString($id, parent::getVoc()."approved-gene-name", $data[2])
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);
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#Add cosmid name

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