initial commit of r3 ipi parser

Author: jctoledo

ipi/ipi.php

@@ -0,0 +1,65 @@
+<?php
+/**
+Copyright (C) 2013 Jose Cruz-Toledo and Alison Callahan
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of
+this software and associated documentation files (the "Software"), to deal in
+the Software without restriction, including without limitation the rights to
+use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
+of the Software, and to permit persons to whom the Software is furnished to do
+so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+*/
+/**
+ * International Protein Index parser
+ * @version 2.0
+ * @author Jose Cruz-Toledo
+ * @description ftp://ftp.ebi.ac.uk/pub/databases/IPI/last_release/current/Final%20Release%20of%20IPI
+*/
+class IPI extends Bio2RDFizer{
+	private static $packageMap = array(
+		"species_xrefs" =>array(
+			"ipi.ARATH.xrefs.gz",
+			"ipi.CHICK.xrefs.gz",
+			"ipi.BOVIN.xrefs.gz", 
+			"ipi.DANRE.xrefs.gz", 
+			"ipi.HUMAN.xrefs.gz",
+			"ipi.MOUSE.xrefs.gz",
+			"ipi.RAT.xrefs.gz"
+		),
+		"gene_xrefs" => array(
+			"ipi.genes.ARATH.xrefs.gz",
+			"ipi.genes.BOVIN.xrefs.gz",
+			"ipi.genes.CHICK.xrefs.gz",
+			"ipi.genes.DANRE.xrefs.gz"
+		),
+		"gi2ipi" => array(
+			"gi2ipi.xrefs.gz"
+		)
+	);
+
+	function __construct($argv){
+
+	}
+	public function Run(){
+
+	}
+
+	public function getPackageMap(){
+		return self::$packageMap;
+	}//getpackagemap
+}
+
+
+
+?>