Merge pull request #2 from biocorecrg/bookworm

Bookworm

Author: toniher

base/Dockerfile

@@ -1,18 +1,15 @@
-FROM debian:buster
-
-# File Author / Maintainer
-MAINTAINER Toni Hermoso Pulido <[email protected]>
+FROM debian:bookworm
 
 ARG PERLBREW_ROOT=/usr/local/perl
-ARG PERL_VERSION=5.28.2
+ARG PERL_VERSION=5.40.0
 # Enable perl build options. Example: --build-arg PERL_BUILD="--thread --debug"
 ARG PERL_BUILD=--thread
 
 # Base Perl and builddep
 RUN set -x; \
-apt-get update && apt-get upgrade -y; \
-apt-get install -y perl bzip2 zip curl \
-	build-essential procps
+  apt-get update && apt-get upgrade -y; \
+  apt-get install -y perl bzip2 zip curl \
+  build-essential procps
 #RUN apt-get build-dep perl
 
 RUN mkdir -p $PERLBREW_ROOT
@@ -22,10 +19,12 @@ RUN bash -c '\curl -L https://install.perlbrew.pl | bash'
 ENV PATH $PERLBREW_ROOT/bin:$PATH
 ENV PERLBREW_PATH $PERLBREW_ROOT/bin
 
+RUN apt install -y libdevel-patchperl-perl
+RUN perlbrew install-patchperl
 RUN perlbrew --notest install $PERL_BUILD perl-$PERL_VERSION
 RUN perlbrew install-cpanm
 RUN bash -c 'source $PERLBREW_ROOT/etc/bashrc'
-		
+
 ENV PERLBREW_ROOT $PERLBREW_ROOT
 ENV PATH $PERLBREW_ROOT/perls/perl-$PERL_VERSION/bin:$PATH
 ENV PERLBREW_PERL perl-$PERL_VERSION

pyenv3-java/Dockerfile

@@ -1,11 +1,7 @@
-FROM biocorecrg/debian-perlbrew-pyenv3:buster
+FROM biocorecrg/debian-perlbrew-pyenv3:bookworm
 
-# File Author / Maintainer
-MAINTAINER Toni Hermoso Pulido <[email protected]>
-MAINTAINER Luca Cozzuto <[email protected]> 
-
-ARG JAVA_VERSION=11
-ARG MAVEN_VERSION=3.6.3
+ARG JAVA_VERSION=17
+ARG MAVEN_VERSION=3.9.9
 
 # Install Redis
 RUN set -x; apt-get update; apt-get -y upgrade; 

pyenv3/Dockerfile

@@ -1,11 +1,7 @@
-FROM biocorecrg/debian-perlbrew:buster
-
-# File Author / Maintainer
-MAINTAINER Toni Hermoso Pulido <[email protected]>
-MAINTAINER Luca Cozzuto <[email protected]> 
+FROM biocorecrg/debian-perlbrew:bookworm
 
 ARG PYENV_ROOT=/usr/local/python
-ARG PYTHON_VERSION=3.7.4
+ARG PYTHON_VERSION=3.13.1
 
 ENV PYENV_ROOT $PYENV_ROOT