diff --git a/benchmark/data/benchmark_api_calling_data.yaml b/benchmark/data/benchmark_api_calling_data.yaml index 85340a81..8405259d 100644 --- a/benchmark/data/benchmark_api_calling_data.yaml +++ b/benchmark/data/benchmark_api_calling_data.yaml @@ -73,3 +73,24 @@ api_calling: expected: parts_of_query: ["https://bio.tools/api/t/", "\\?topic=", "[mM]etabolomics"] + - case: scanpy:pl:scatter + input: + prompt: + exact_variable_names: "Make a scatter plot of n_genes_by_counts vs total_counts." + expected: + parts_of_query: + ["sc.pl.scatter\\(", "n_genes_by_counts", "total_counts", "\\)"] + - case: scanpy:pl:pca + input: + prompt: + fuzzy_search: "plot the PCA of the data colored by n_genes_by_counts and total_counts." + expected: + parts_of_query: + ["sc.pl.pca\\(", ["n_genes_by_counts", "total_counts"], "\\)"] + - case: scanpy:pl:tsne + input: + prompt: + fuzzy_search: "plot the tsne embeddding of the data colored by n_genes_by_counts." + expected: + parts_of_query: + ["sc.pl.tsne\\(", "n_genes_by_counts", "\\)"] diff --git a/benchmark/test_api_calling.py b/benchmark/test_api_calling.py index 67c51789..749dbedc 100644 --- a/benchmark/test_api_calling.py +++ b/benchmark/test_api_calling.py @@ -5,7 +5,7 @@ import pytest from biochatter._misc import ensure_iterable -from biochatter.api_agent import BioToolsQueryBuilder, OncoKBQueryBuilder +from biochatter.api_agent import BioToolsQueryBuilder, OncoKBQueryBuilder, ScanpyPlQueryBuilder, format_as_rest_call, format_as_python_call from .benchmark_utils import ( get_result_file_path, @@ -15,7 +15,7 @@ from .conftest import calculate_bool_vector_score -def test_api_calling( +def test_web_api_calling( model_name, test_data_api_calling, conversation, @@ -32,6 +32,10 @@ def test_api_calling( pytest.skip( f"model {model_name} does not support API calling for {task} benchmark", ) + if "scanpy" in yaml_data["case"]: + pytest.skip( + "scanpy is not a web API", + ) def run_test(): conversation.reset() # needs to be reset for each test @@ -39,17 +43,14 @@ def run_test(): builder = OncoKBQueryBuilder() elif "biotools" in yaml_data["case"]: builder = BioToolsQueryBuilder() + elif "scanpy:pl" in yaml_data["case"]: + builder = ScanpyPlQueryBuilder() parameters = builder.parameterise_query( question=yaml_data["input"]["prompt"], conversation=conversation, ) - params = parameters.dict(exclude_none=True) - endpoint = params.pop("endpoint") - base_url = params.pop("base_url") - params.pop("question_uuid") - full_url = f"{base_url.rstrip('/')}/{endpoint.lstrip('/')}" - api_query = f"{full_url}?{urlencode(params)}" + api_query = format_as_rest_call(parameters) score = [] for expected_part in ensure_iterable( @@ -72,3 +73,57 @@ def run_test(): yaml_data["hash"], get_result_file_path(task), ) + +def test_python_api_calling( + model_name, + test_data_api_calling, + conversation, + multiple_testing, +): + """Test the Python API calling capability.""" + task = f"{inspect.currentframe().f_code.co_name.replace('test_', '')}" + yaml_data = test_data_api_calling + + skip_if_already_run( + model_name=model_name, + task=task, + md5_hash=yaml_data["hash"], + ) + + if "scanpy" not in yaml_data["case"]: + pytest.skip( + "Function to be tested is not a Python API", + ) + + def run_test(): + conversation.reset() # needs to be reset for each test + if "scanpy:pl" in yaml_data["case"]: + builder = ScanpyPlQueryBuilder() + parameters = builder.parameterise_query( + question=yaml_data["input"]["prompt"], + conversation=conversation, + ) + + method_call = format_as_python_call(parameters) + + score = [] + for expected_part in ensure_iterable( + yaml_data["expected"]["parts_of_query"], + ): + if re.search(expected_part, method_call): + score.append(True) + else: + score.append(False) + + return calculate_bool_vector_score(score) + + mean_score, max, n_iterations = multiple_testing(run_test) + + write_results_to_file( + model_name, + yaml_data["case"], + f"{mean_score}/{max}", + f"{n_iterations}", + yaml_data["hash"], + get_result_file_path(task), + ) diff --git a/biochatter/api_agent/__init__.py b/biochatter/api_agent/__init__.py index 21f0fca9..2de0343d 100644 --- a/biochatter/api_agent/__init__.py +++ b/biochatter/api_agent/__init__.py @@ -12,6 +12,8 @@ BlastQueryParameters, ) from .oncokb import OncoKBFetcher, OncoKBInterpreter, OncoKBQueryBuilder +from .scanpy_pl import ScanpyPlQueryBuilder +from .formatters import format_as_rest_call, format_as_python_call __all__ = [ "BaseFetcher", @@ -28,4 +30,7 @@ "BioToolsInterpreter", "BioToolsQueryBuilder", "APIAgent", -] + "ScanpyPlQueryBuilder", + "format_as_rest_call", + "format_as_python_call", +] \ No newline at end of file diff --git a/biochatter/api_agent/formatters.py b/biochatter/api_agent/formatters.py new file mode 100644 index 00000000..f2009224 --- /dev/null +++ b/biochatter/api_agent/formatters.py @@ -0,0 +1,41 @@ +"""Formatters for API calls (Pydantic models to strings).""" + +from urllib.parse import urlencode + +from pydantic import BaseModel + +def format_as_rest_call(model: BaseModel) -> str: + """Convert a parameter model (BaseModel) into a REST API call string. + + Args: + model: Pydantic model containing API call parameters + + Returns: + String representation of the REST API call + + """ + params = model.dict(exclude_none=True) + endpoint = params.pop("endpoint") + base_url = params.pop("base_url") + params.pop("question_uuid", None) + + full_url = f"{base_url.rstrip('/')}/{endpoint.strip('/')}" + return f"{full_url}?{urlencode(params)}" + +def format_as_python_call(model: BaseModel) -> str: + """Convert a parameter model into a Python method call string. + + Args: + model: Pydantic model containing method parameters + + Returns: + String representation of the Python method call + + """ + params = model.dict(exclude_none=True) + method_name = params.pop("method_name", None) + params.pop("question_uuid", None) + + param_str = ", ".join(f"{k}={repr(v)}" for k, v in params.items()) + + return f"{method_name}({param_str})" diff --git a/biochatter/api_agent/scanpy_pl.py b/biochatter/api_agent/scanpy_pl.py new file mode 100644 index 00000000..d288048c --- /dev/null +++ b/biochatter/api_agent/scanpy_pl.py @@ -0,0 +1,514 @@ +"""Module for interacting with the `scanpy` API for plotting (`pl`).""" + +import uuid +from collections.abc import Callable +from typing import TYPE_CHECKING, Any + +from langchain.chains.openai_functions import create_structured_output_runnable +from langchain_core.pydantic_v1 import BaseModel, Field + +if TYPE_CHECKING: + from biochatter.llm_connect import Conversation + +from .abc import BaseQueryBuilder + +SCANPY_PL_QUERY_PROMPT = """ +You are a world class algorithm for creating queries in structured formats. +Your task is to use the Python API of `scanpy` to answer questions about the `scanpy` plotting module. +You should prefix the function calls with `scanpy.pl.`, for instance, for a scatter plot, you should use +`scanpy.pl.scatter`. + +Extract information from the following documentation to answer the user's question: + +The plotting module scanpy.pl largely parallels the tl.* and a few of the pp.* functions. For most tools and for some +preprocessing functions, you’ll find a plotting function with the same name. + +Generic +pl.scatter +Scatter plot along observations or variables axes. +pl.heatmap +Heatmap of the expression values of genes. +pl.dotplot +Makes a dot plot of the expression values of var_names. +pl.tracksplot +In this type of plot each var_name is plotted as a filled line plot where the y values correspond to the var_name values +and x is each of the cells. +pl.violin +Violin plot. +pl.stacked_violin +Stacked violin plots. +pl.matrixplot +Creates a heatmap of the mean expression values per group of each var_names. +pl.clustermap +Hierarchically-clustered heatmap. +pl.ranking +Plot rankings. +pl.dendrogram +Plots a dendrogram of the categories defined in groupby. +Classes +These classes allow fine tuning of visual parameters. + +pl.DotPlot +Allows the visualization of two values that are encoded as dot size and color. +pl.MatrixPlot +Allows the visualization of values using a color map. +pl.StackedViolin +Stacked violin plots. +Preprocessing +Methods for visualizing quality control and results of preprocessing functions. + +pl.highest_expr_genes +Fraction of counts assigned to each gene over all cells. +pl.filter_genes_dispersion +Plot dispersions versus means for genes. +pl.highly_variable_genes +Plot dispersions or normalized variance versus means for genes. +pl.scrublet_score_distribution +Plot histogram of doublet scores for observed transcriptomes and simulated doublets. +Tools +Methods that extract and visualize tool-specific annotation in an AnnData object. For any method in module tl, there is a method with the same name in pl. + +PCA + +pl.pca +Scatter plot in PCA coordinates. +pl.pca_loadings +Rank genes according to contributions to PCs. +pl.pca_variance_ratio +Plot the variance ratio. +pl.pca_overview +Plot PCA results. +Embeddings + +pl.tsne +Scatter plot in tSNE basis. +pl.umap +Scatter plot in UMAP basis. +pl.diffmap +Scatter plot in Diffusion Map basis. +pl.draw_graph +Scatter plot in graph-drawing basis. +pl.spatial +Scatter plot in spatial coordinates. +pl.embedding +Scatter plot for user specified embedding basis (e.g. umap, pca, etc). +Compute densities on embeddings. + +pl.embedding_density +Plot the density of cells in an embedding (per condition). +Branching trajectories and pseudotime, clustering + +Visualize clusters using one of the embedding methods passing color='louvain'. + +pl.dpt_groups_pseudotime +Plot groups and pseudotime. +pl.dpt_timeseries +Heatmap of pseudotime series. +pl.paga +Plot the PAGA graph through thresholding low-connectivity edges. +pl.paga_path +Gene expression and annotation changes along paths in the abstracted graph. +pl.paga_compare +Scatter and PAGA graph side-by-side. +Marker genes + +pl.rank_genes_groups +Plot ranking of genes. +pl.rank_genes_groups_violin +Plot ranking of genes for all tested comparisons. +pl.rank_genes_groups_stacked_violin +Plot ranking of genes using stacked_violin plot (see stacked_violin()) +pl.rank_genes_groups_heatmap +Plot ranking of genes using heatmap plot (see heatmap()) +pl.rank_genes_groups_dotplot +Plot ranking of genes using dotplot plot (see dotplot()) +pl.rank_genes_groups_matrixplot +Plot ranking of genes using matrixplot plot (see matrixplot()) +pl.rank_genes_groups_tracksplot +Plot ranking of genes using heatmap plot (see heatmap()) +Simulations + +pl.sim +Plot results of simulation. +""" + + +class ScanpyPlScatterQueryParameters(BaseModel): + """Parameters for querying the scanpy `pl.scatter` API.""" + + method_name: str = Field( + default="sc.pl.scatter", + description="The name of the method to call.", + ) + question_uuid: str | None = Field( + default_factory=lambda: str(uuid.uuid4()), + description="Unique identifier for the question.", + ) + adata: str = Field(description="Annotated data matrix.",) + x: str | None = Field(default=None, description="x coordinate.",) + y: str | None = Field(default=None, description="y coordinate.",) + color: str | tuple[float, ...] | list[str | tuple[float, ...]] | None = Field( + default=None, + description="Keys for annotations of observations/cells or variables/genes, or a hex color specification.", + ) + use_raw: bool | None = Field( + default=None, + description="Whether to use raw attribute of adata. Defaults to True if .raw is present.", + ) + layers: str | list[str] | None = Field( + default=None, + description="Layer(s) to use from adata's layers attribute.", + ) + basis: str | None = Field( + default=None, + description="String that denotes a plotting tool that computed coordinates (e.g., 'pca', 'tsne', 'umap').", + ) + sort_order: bool = Field( + default=True, + description="For continuous annotations used as color parameter, plot data points with higher values on top.", + ) + groups: str | list[str] | None = Field( + default=None, + description="Restrict to specific categories in categorical observation annotation.", + ) + projection: str = Field( + default="2d", + description="Projection of plot ('2d' or '3d').", + ) + legend_loc: str | None = Field( + default="right margin", + description="Location of legend ('none', 'right margin', 'on data', etc.).", + ) + size: int | float | None = Field( + default=None, + description="Point size. If None, automatically computed as 120000 / n_cells.", + ) + color_map: str | None = Field( + default=None, + description="Color map to use for continuous variables (e.g., 'magma', 'viridis').", + ) + title: str | list[str] | None = Field( + default=None, + description="Title for panels either as string or list of strings.", + ) + show: bool | None = Field( + default=None, + description="Show the plot, do not return axis.", + ) + save: str | bool | None = Field( + default=None, + description="If True or a str, save the figure. String is appended to default filename.", + ) + +### Embeddings +class ScanpyPlPcaQueryParameters(BaseModel): + """Parameters for querying the scanpy `pl.pca` API.""" + + question_uuid: str | None = Field( + default=None, + description="Unique identifier for the question.", + ) + adata: str = Field( + ..., + description="Annotated data matrix.", + ) + color: str | list[str] | None = Field( + default=None, + description="Keys for annotations of observations/cells or variables/genes.", + ) + components: str | list[str] = Field( + default="1,2", + description="For example, ['1,2', '2,3']. To plot all available components use 'all'.", + ) + projection: str = Field( + default="2d", + description="Projection of plot.", + ) + legend_loc: str = Field( + default="right margin", + description="Location of legend.", + ) + legend_fontsize: int | float | str | None = Field( + default=None, + description="Font size for legend.", + ) + legend_fontweight: int | str | None = Field( + default=None, + description="Font weight for legend.", + ) + color_map: str | None = Field( + default=None, + description="String denoting matplotlib color map.", + ) + palette: str | list[str] | dict | None = Field( + default=None, + description="Colors to use for plotting categorical annotation groups.", + ) + frameon: bool | None = Field( + default=None, + description="Draw a frame around the scatter plot.", + ) + size: int | float | None = Field( + default=None, + description="Point size. If `None`, is automatically computed as 120000 / n_cells.", + ) + title: str | list[str] | None = Field( + default=None, + description="Provide title for panels either as string or list of strings.", + ) + show: bool | None = Field( + default=None, + description="Show the plot, do not return axis.", + ) + save: str | bool | None = Field( + default=None, + description="If `True` or a `str`, save the figure.", + ) + ax: str | None = Field( + default=None, + description="A matplotlib axes object.", + ) + return_fig: bool = Field( + default=False, + description="Return the matplotlib figure object.", + ) + marker: str | None = Field( + default=".", + description="Marker symbol.", + ) + annotate_var_explained: bool = Field( + default=False, + description="Annotate the percentage of explained variance.", + ) + +class ScanpyPlTsneQueryParameters(BaseModel): + """Parameters for querying the Scanpy `pl.tsne` API.""" + + adata: str = Field( + ..., + description="Annotated data matrix.", + ) + color: str | list[str] | None = Field( + default=None, + description="Keys for annotations of observations/cells or variables/genes.", + ) + gene_symbols: str | None = Field( + default=None, + description="Column name in `.var` DataFrame that stores gene symbols.", + ) + use_raw: bool | None = Field( + default=None, + description="Use `.raw` attribute of `adata` for coloring with gene expression.", + ) + sort_order: bool = Field( + default=True, + description="Plot data points with higher values on top for continuous annotations.", + ) + edges: bool = Field( + default=False, + description="Show edges.", + ) + edges_width: float = Field( + default=0.1, + description="Width of edges.", + ) + edges_color: str | list[float] | list[str] = Field( + default="grey", + description="Color of edges.", + ) + neighbors_key: str | None = Field( + default=None, + description="Key for neighbors connectivities.", + ) + arrows: bool = Field( + default=False, + description="Show arrows (deprecated in favor of `scvelo.pl.velocity_embedding`).", + ) + arrows_kwds: dict[str, Any] | None = Field( + default=None, + description="Arguments passed to `quiver()`.", + ) + groups: str | None = Field( + default=None, + description="Restrict to specific categories in categorical observation annotation.", + ) + components: str | list[str] | None = Field( + default=None, + description="Components to plot, e.g., ['1,2', '2,3']. Use 'all' to plot all available components.", + ) + projection: str = Field( + default="2d", + description="Projection of plot ('2d' or '3d').", + ) + legend_loc: str = Field( + default="right margin", + description="Location of legend.", + ) + legend_fontsize: int | float | str | None = Field( + default=None, + description="Font size for legend.", + ) + legend_fontweight: int | str = Field( + default="bold", + description="Font weight for legend.", + ) + legend_fontoutline: int | None = Field( + default=None, + description="Line width of the legend font outline in pt.", + ) + size: float | list[float] | None = Field( + default=None, + description="Point size. If `None`, computed as 120000 / n_cells.", + ) + color_map: str | Any | None = Field( + default=None, + description="Color map for continuous variables.", + ) + palette: str | list[str] | Any | None = Field( + default=None, + description="Colors for plotting categorical annotation groups.", + ) + na_color: str | tuple[float, ...] = Field( + default="lightgray", + description="Color for null or masked values.", + ) + na_in_legend: bool = Field( + default=True, + description="Include missing values in the legend.", + ) + frameon: bool | None = Field( + default=None, + description="Draw a frame around the scatter plot.", + ) + title: str | list[str] | None = Field( + default=None, + description="Title for panels, either as string or list of strings.", + ) + vmin: str | float | Any | list[str | float | Any] | None = Field( + default=None, + description="Lower limit of the color scale.", + ) + vmax: str | float | Any | list[str | float | Any] | None = Field( + default=None, + description="Upper limit of the color scale.", + ) + vcenter: str | float | Any | list[str | float | Any] | None = Field( + default=None, + description="Center of the color scale, useful for diverging colormaps.", + ) + norm: Any | None = Field( + default=None, + description="Normalization for the colormap.", + ) + add_outline: bool = Field( + default=False, + description="Add a thin border around groups of dots.", + ) + outline_width: tuple[float, float] = Field( + default=(0.3, 0.05), + description="Width of the outline as a fraction of the scatter dot size.", + ) + outline_color: tuple[str, str] = Field( + default=("black", "white"), + description="Colors for the outline: border color and gap color.", + ) + ncols: int = Field( + default=4, + description="Number of panels per row.", + ) + hspace: float = Field( + default=0.25, + description="Height of the space between multiple panels.", + ) + wspace: float | None = Field( + default=None, + description="Width of the space between multiple panels.", + ) + return_fig: bool | None = Field( + default=None, + description="Return the matplotlib figure.", + ) + show: bool | None = Field( + default=None, + description="Show the plot; do not return axis.", + ) + save: str | bool | None = Field( + default=None, + description="If `True` or a `str`, save the figure.", + ) + ax: Any | None = Field( + default=None, + description="A matplotlib axes object.", + ) + kwargs: dict[str, Any] | None = Field( + default=None, + description="Additional arguments passed to `matplotlib.pyplot.scatter()`.", + ) + +class ScanpyPlQueryBuilder(BaseQueryBuilder): + """A class for building an ScanpyPlQuery object.""" + + def create_runnable( + self, + query_parameters: "ScanpyPlScatterQueryParameters", + conversation: "Conversation", + ) -> Callable: + """Create a runnable object for executing queries. + + Create runnable using the LangChain `create_structured_output_runnable` + method. + + Args: + ---- + query_parameters: A Pydantic data model that specifies the fields of + the API that should be queried. + + conversation: A BioChatter conversation object. + + Returns: + ------- + A Callable object that can execute the query. + + """ + return create_structured_output_runnable( + output_schema=query_parameters, + llm=conversation.chat, + prompt=self.structured_output_prompt, + ) + + def parameterise_query( + self, + question: str, + conversation: "Conversation", + ) -> ScanpyPlScatterQueryParameters: + """Generate an ScanpyPlQuery object. + + Generate a ScanpyPlQuery object based on the given question, prompt, + and BioChatter conversation. Uses a Pydantic model to define the API + fields. Creates a runnable that can be invoked on LLMs that are + qualified to parameterise functions. + + Args: + ---- + question (str): The question to be answered. + + conversation: The conversation object used for parameterising the + ScanpyPlQuery. + + Returns: + ------- + ScanpyPlQueryParameters: the parameterised query object (Pydantic + model) + + """ + runnable = self.create_runnable( + query_parameters=ScanpyPlScatterQueryParameters, + conversation=conversation, + ) + scanpy_pl_call_obj = runnable.invoke( + { + "input": f"Answer:\n{question} based on:\n {SCANPY_PL_QUERY_PROMPT}", + }, + ) + scanpy_pl_call_obj.question_uuid = str(uuid.uuid4()) + return scanpy_pl_call_obj diff --git a/poetry.lock b/poetry.lock index 7489f058..7c652422 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,13 +13,13 @@ files = [ [[package]] name = "accelerate" -version = "1.1.1" +version = "1.2.0" description = "Accelerate" optional = true python-versions = ">=3.9.0" files = [ - {file = 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"7aa9bbd49d9d15034a2e3a3e3d186ed97c7d8df33044623e86deef4836a9f74c" +content-hash = "e941ee4816aabccecf3481c5d1880eca5edd38cfd4f15d3b75dec3bece3e09fd" diff --git a/pyproject.toml b/pyproject.toml index 0230c6cf..b60e0088 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -34,6 +34,7 @@ Issues = "https://github.com/biocypher/biochatter/issues" python = ">=3.10,<3.13" langchain = "^0.2.5" openai = "^1.1.0" +httpx = "0.27.2" pymupdf = "^1.22.3" pymilvus = "2.2.8" nltk = "^3.8.1" @@ -59,9 +60,9 @@ tiktoken = "0.7.0" grandalf = "^0.8" importlib-metadata = "^8.0.0" colorcet = "^3.1.0" - langchain-anthropic = "^0.1.22" anthropic = "^0.33.0" + [tool.poetry.extras] streamlit = ["streamlit"] podcast = ["gTTS"] diff --git a/test/test_api_agent.py b/test/test_api_agent.py index 6c082658..cd9b96d1 100644 --- a/test/test_api_agent.py +++ b/test/test_api_agent.py @@ -28,6 +28,12 @@ OncoKBQueryBuilder, OncoKBQueryParameters, ) +from biochatter.api_agent.scanpy_pl import ( + SCANPY_PL_QUERY_PROMPT, + ScanpyPlQueryBuilder, + ScanpyPlQueryParameters, +) + from biochatter.llm_connect import Conversation, GptConversation @@ -422,3 +428,54 @@ def test_summarise_results(mock_prompt, mock_conversation, mock_chain): mock_chain.invoke.assert_called_once_with( {"input": {expected_summary_prompt}}, ) + +class TestScanpyPlQueryBuilder: + @pytest.fixture() + def mock_create_runnable(self): + with patch( + "biochatter.api_agent.scanpy_pl.create_structured_output_runnable" + ) as mock: + mock_runnable = MagicMock() + mock.return_value = mock_runnable + yield mock_runnable + + def test_create_runnable(self, mock_create_runnable): + # Arrange + query_builder = ScanpyPlQueryBuilder() + mock_conversation = MagicMock() + + # Act + result = query_builder.create_runnable( + ScanpyPlQueryParameters, + mock_conversation, + ) + + # Assert + assert result == mock_create_runnable + + def test_parameterise_query(self, mock_create_runnable): + # Arrange + query_builder = ScanpyPlQueryBuilder() + mock_conversation = MagicMock() + question = "Create a scatter plot of n_genes_by_counts vs total_counts." + expected_input = f"Answer:\n{question} based on:\n {SCANPY_PL_QUERY_PROMPT}" + mock_query_obj = MagicMock() + mock_create_runnable.invoke.return_value = mock_query_obj + + # Act + result = query_builder.parameterise_query(question, mock_conversation) + + # Assert + mock_create_runnable.invoke.assert_called_once_with({"input": expected_input}) + assert hasattr(result, "question_uuid") + assert result == mock_query_obj + + + + +class TestScanpyPlFetcher: + pass + + +class TestScanpyPlInterpreter: + pass diff --git a/test/test_formatters.py b/test/test_formatters.py new file mode 100644 index 00000000..f6a9afaf --- /dev/null +++ b/test/test_formatters.py @@ -0,0 +1,78 @@ +from pydantic.v1 import BaseModel +from biochatter.api_agent.formatters import format_as_rest_call, format_as_python_call + +class TestParams(BaseModel): + """Test parameter model for REST calls.""" + base_url: str + endpoint: str + param1: str | None = None + param2: int | None = None + question_uuid: str | None = None + +class TestMethodParams(BaseModel): + """Test parameter model for Python method_name calls.""" + method_name: str + param1: str | None = None + param2: int | None = None + question_uuid: str | None = None + +def test_format_as_rest_call_basic(): + params = TestParams( + base_url="http://api.example.com", + endpoint="/v1/test", + param1="value1", + param2=42 + ) + expected = "http://api.example.com/v1/test?param1=value1¶m2=42" + assert format_as_rest_call(params) == expected + +def test_format_as_rest_call_with_trailing_slash(): + params = TestParams( + base_url="http://api.example.com/", + endpoint="/v1/test/", + param1="value1" + ) + expected = "http://api.example.com/v1/test?param1=value1" + assert format_as_rest_call(params) == expected + +def test_format_as_rest_call_no_params(): + params = TestParams( + base_url="http://api.example.com", + endpoint="/v1/test" + ) + expected = "http://api.example.com/v1/test?" + assert format_as_rest_call(params) == expected + +def test_format_as_python_call_with_module(): + params = TestMethodParams( + method_name="sqrt", + param1="16", + param2=42 + ) + expected = "sqrt(param1='16', param2=42)" + assert format_as_python_call(params) == expected + +def test_format_as_python_call_without_module(): + params = TestMethodParams( + method_name="calculate", + param1="test", + param2=123 + ) + expected = "calculate(param1='test', param2=123)" + assert format_as_python_call(params) == expected + +def test_format_as_python_call_no_params(): + params = TestMethodParams( + method_name="empty_function" + ) + expected = "empty_function()" + assert format_as_python_call(params) == expected + +def test_format_as_python_call_ignores_question_uuid(): + params = TestMethodParams( + method_name="test", + param1="value", + question_uuid="123-456" + ) + expected = "test(param1='value')" + assert format_as_python_call(params) == expected \ No newline at end of file