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coverage/class_index.html

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<header>
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<div class="content">
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<h1>Coverage report:
14-
<span class="pc_cov">90%</span>
14+
<span class="pc_cov">81%</span>
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</h1>
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<aside id="help_panel_wrapper">
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<input id="help_panel_state" type="checkbox">
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<a class="button current">Classes</a>
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</h2>
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<p class="text">
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<a class="nav" href="https://coverage.readthedocs.io/en/7.5.3">coverage.py v7.5.3</a>,
58-
created at 2024-06-14 19:03 +0000
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<a class="nav" href="https://coverage.readthedocs.io/en/7.6.1">coverage.py v7.6.1</a>,
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created at 2024-10-03 15:25 +0000
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</p>
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</div>
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</header>
@@ -451,10 +451,10 @@ <h2>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_cat_pdb_py.html">biobb_structure_utils/utils/cat_pdb.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_cat_pdb_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
454-
<td>13</td>
455-
<td>1</td>
454+
<td>24</td>
455+
<td>11</td>
456456
<td>0</td>
457-
<td class="right" data-ratio="12 13">92%</td>
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<td class="right" data-ratio="13 24">54%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_closest_residues_py.html#t13">biobb_structure_utils/utils/closest_residues.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_closest_residues_py.html">biobb_structure_utils/utils/closest_residues.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_closest_residues_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
470-
<td>15</td>
471-
<td>1</td>
470+
<td>25</td>
471+
<td>10</td>
472472
<td>0</td>
473-
<td class="right" data-ratio="14 15">93%</td>
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<td class="right" data-ratio="15 25">60%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_common_py.html">biobb_structure_utils/utils/common.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_common_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
478-
<td>18</td>
478+
<td>134</td>
479+
<td>24</td>
479480
<td>0</td>
480-
<td>0</td>
481-
<td class="right" data-ratio="18 18">100%</td>
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<td class="right" data-ratio="110 134">82%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_atoms_py.html#t15">biobb_structure_utils/utils/extract_atoms.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_atoms_py.html">biobb_structure_utils/utils/extract_atoms.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_extract_atoms_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
494-
<td>17</td>
495-
<td>1</td>
494+
<td>27</td>
495+
<td>10</td>
496496
<td>0</td>
497-
<td class="right" data-ratio="16 17">94%</td>
497+
<td class="right" data-ratio="17 27">63%</td>
498498
</tr>
499499
<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_chain_py.html#t13">biobb_structure_utils/utils/extract_chain.py</a></td>
@@ -507,10 +507,10 @@ <h2>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_chain_py.html">biobb_structure_utils/utils/extract_chain.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_extract_chain_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
510-
<td>16</td>
511-
<td>1</td>
510+
<td>33</td>
511+
<td>14</td>
512512
<td>0</td>
513-
<td class="right" data-ratio="15 16">94%</td>
513+
<td class="right" data-ratio="19 33">58%</td>
514514
</tr>
515515
<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_heteroatoms_py.html#t13">biobb_structure_utils/utils/extract_heteroatoms.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_heteroatoms_py.html">biobb_structure_utils/utils/extract_heteroatoms.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_extract_heteroatoms_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
526-
<td>15</td>
527-
<td>1</td>
526+
<td>25</td>
527+
<td>10</td>
528528
<td>0</td>
529-
<td class="right" data-ratio="14 15">93%</td>
529+
<td class="right" data-ratio="15 25">60%</td>
530530
</tr>
531531
<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_model_py.html#t13">biobb_structure_utils/utils/extract_model.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_model_py.html">biobb_structure_utils/utils/extract_model.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_extract_model_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
542-
<td>16</td>
543-
<td>1</td>
542+
<td>33</td>
543+
<td>14</td>
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<td>0</td>
545-
<td class="right" data-ratio="15 16">94%</td>
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<td class="right" data-ratio="19 33">58%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_molecule_py.html#t12">biobb_structure_utils/utils/extract_molecule.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_molecule_py.html">biobb_structure_utils/utils/extract_molecule.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_extract_molecule_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
558-
<td>15</td>
559-
<td>1</td>
558+
<td>25</td>
559+
<td>10</td>
560560
<td>0</td>
561-
<td class="right" data-ratio="14 15">93%</td>
561+
<td class="right" data-ratio="15 25">60%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_residues_py.html#t13">biobb_structure_utils/utils/extract_residues.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_extract_residues_py.html">biobb_structure_utils/utils/extract_residues.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_extract_residues_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
574-
<td>15</td>
575-
<td>1</td>
574+
<td>25</td>
575+
<td>10</td>
576576
<td>0</td>
577-
<td class="right" data-ratio="14 15">93%</td>
577+
<td class="right" data-ratio="15 25">60%</td>
578578
</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_remove_ligand_py.html#t13">biobb_structure_utils/utils/remove_ligand.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_remove_ligand_py.html">biobb_structure_utils/utils/remove_ligand.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_remove_ligand_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
590-
<td>15</td>
591-
<td>1</td>
590+
<td>25</td>
591+
<td>10</td>
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<td>0</td>
593-
<td class="right" data-ratio="14 15">93%</td>
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<td class="right" data-ratio="15 25">60%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_remove_molecules_py.html#t13">biobb_structure_utils/utils/remove_molecules.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_remove_molecules_py.html">biobb_structure_utils/utils/remove_molecules.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_remove_molecules_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
606-
<td>15</td>
607-
<td>1</td>
606+
<td>25</td>
607+
<td>10</td>
608608
<td>0</td>
609-
<td class="right" data-ratio="14 15">93%</td>
609+
<td class="right" data-ratio="15 25">60%</td>
610610
</tr>
611611
<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_remove_pdb_water_py.html#t10">biobb_structure_utils/utils/remove_pdb_water.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_remove_pdb_water_py.html">biobb_structure_utils/utils/remove_pdb_water.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_remove_pdb_water_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
622-
<td>12</td>
623-
<td>1</td>
622+
<td>22</td>
623+
<td>10</td>
624624
<td>0</td>
625-
<td class="right" data-ratio="11 12">92%</td>
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<td class="right" data-ratio="12 22">55%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_renumber_structure_py.html#t15">biobb_structure_utils/utils/renumber_structure.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_renumber_structure_py.html">biobb_structure_utils/utils/renumber_structure.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_renumber_structure_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
638-
<td>17</td>
639-
<td>1</td>
638+
<td>28</td>
639+
<td>11</td>
640640
<td>0</td>
641-
<td class="right" data-ratio="16 17">94%</td>
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<td class="right" data-ratio="17 28">61%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_sort_gro_residues_py.html#t11">biobb_structure_utils/utils/sort_gro_residues.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_sort_gro_residues_py.html">biobb_structure_utils/utils/sort_gro_residues.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_sort_gro_residues_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
654-
<td>13</td>
655-
<td>1</td>
654+
<td>23</td>
655+
<td>10</td>
656656
<td>0</td>
657-
<td class="right" data-ratio="12 13">92%</td>
657+
<td class="right" data-ratio="13 23">57%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_str_check_add_hydrogens_py.html#t11">biobb_structure_utils/utils/str_check_add_hydrogens.py</a></td>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_str_check_add_hydrogens_py.html">biobb_structure_utils/utils/str_check_add_hydrogens.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_str_check_add_hydrogens_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
670-
<td>13</td>
671-
<td>1</td>
670+
<td>23</td>
671+
<td>10</td>
672672
<td>0</td>
673-
<td class="right" data-ratio="12 13">92%</td>
673+
<td class="right" data-ratio="13 23">57%</td>
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</tr>
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<tr class="region">
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<td class="name left"><a href="z_cc8067c15db60eec_structure_check_py.html#t12">biobb_structure_utils/utils/structure_check.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_structure_check_py.html">biobb_structure_utils/utils/structure_check.py</a></td>
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<td class="name left"><a href="z_cc8067c15db60eec_structure_check_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
686-
<td>14</td>
687-
<td>1</td>
686+
<td>24</td>
687+
<td>10</td>
688688
<td>0</td>
689-
<td class="right" data-ratio="13 14">93%</td>
689+
<td class="right" data-ratio="14 24">58%</td>
690690
</tr>
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</tbody>
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<tfoot>
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<tr class="total">
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<td class="name left">Total</td>
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<td class="name left">&nbsp;</td>
696-
<td>1258</td>
697-
<td>123</td>
696+
<td>1540</td>
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<td>292</td>
698698
<td>0</td>
699-
<td class="right" data-ratio="1135 1258">90%</td>
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<td class="right" data-ratio="1248 1540">81%</td>
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</tr>
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</tfoot>
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</table>
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<footer>
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<div class="content">
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<p>
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<a class="nav" href="https://coverage.readthedocs.io/en/7.5.3">coverage.py v7.5.3</a>,
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created at 2024-06-14 19:03 +0000
710+
<a class="nav" href="https://coverage.readthedocs.io/en/7.6.1">coverage.py v7.6.1</a>,
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created at 2024-10-03 15:25 +0000
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</p>
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</div>
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<aside class="hidden">

coverage/coverage.xml

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3+
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<sources>
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<source>/home/user/actions-runner/_work/biobb_structure_utils/biobb_structure_utils</source>

coverage/function_index.html

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<a class="button" href="class_index.html">Classes</a>
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</h2>
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<p class="text">
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<a class="nav" href="https://coverage.readthedocs.io/en/7.5.3">coverage.py v7.5.3</a>,
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created at 2024-06-14 19:03 +0000
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<a class="nav" href="https://coverage.readthedocs.io/en/7.6.1">coverage.py v7.6.1</a>,
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created at 2024-10-03 15:25 +0000
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</p>
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</div>
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</header>
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<footer>
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<div class="content">
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<p>
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<a class="nav" href="https://coverage.readthedocs.io/en/7.5.3">coverage.py v7.5.3</a>,
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created at 2024-06-14 19:03 +0000
1646+
<a class="nav" href="https://coverage.readthedocs.io/en/7.6.1">coverage.py v7.6.1</a>,
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created at 2024-10-03 15:25 +0000
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</div>
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<aside class="hidden">

coverage/index.html

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</h2>
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<p class="text">
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<a class="nav" href="https://coverage.readthedocs.io/en/7.5.3">coverage.py v7.5.3</a>,
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created at 2024-06-14 19:03 +0000
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<a class="nav" href="https://coverage.readthedocs.io/en/7.6.1">coverage.py v7.6.1</a>,
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created at 2024-10-03 15:25 +0000
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</p>
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</div>
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</header>
@@ -375,8 +375,8 @@ <h2>
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<footer>
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<div class="content">
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<p>
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<a class="nav" href="https://coverage.readthedocs.io/en/7.5.3">coverage.py v7.5.3</a>,
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created at 2024-06-14 19:03 +0000
378+
<a class="nav" href="https://coverage.readthedocs.io/en/7.6.1">coverage.py v7.6.1</a>,
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created at 2024-10-03 15:25 +0000
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</p>
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</div>
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<aside class="hidden">

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