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ENH: Add aligner property to annotate-reads-card outputs #19

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VinzentRisch opened this issue Jan 4, 2024 · 0 comments · Fixed by #20
Closed

ENH: Add aligner property to annotate-reads-card outputs #19

VinzentRisch opened this issue Jan 4, 2024 · 0 comments · Fixed by #20
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@VinzentRisch
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The annoate-reads-card action creates outputs of type SampleData[CARDAlleleAnnotation] and SampleData[CARDGeneAnnotation].
These outputs can be used with the function kmer-analysis that is currently under development.
But the kmer-analysis can only be performed if the outputs were created with one of the three possible aligners of the annoate-reads-card function.

Because of this one of three possible properties ("kma", "bowtie2", "bwa") has to be added to the SampleData[CARDAlleleAnnotation] and SampleData[CARDGeneAnnotation] outputs.

@VinzentRisch VinzentRisch self-assigned this Jan 4, 2024
@VinzentRisch VinzentRisch linked a pull request Jan 4, 2024 that will close this issue
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