chore: modernize pyproject.toml (#19)

Author: bouweandela

.github/workflows/ci.yml

@@ -32,7 +32,7 @@ jobs:
           cache: poetry
 
       - name: Install Dependencies using Poetry
-        run: poetry install
+        run: poetry install --extras dev
 
       - name: Check code
         run: poetry run pre-commit run --all
@@ -58,7 +58,7 @@ jobs:
           cache: poetry
 
       - name: Install dependencies
-        run: poetry install
+        run: poetry install --extras dev
 
       - name: Run pytest
         run: poetry run coverage run -m pytest tests/tests.py

.github/workflows/release-please.yml

@@ -48,7 +48,7 @@ jobs:
 
       - name: Install Dependencies using Poetry
         run: |
-          poetry install
+          poetry install --extras dev
 
       - name: Publish to PyPi
         env:

.gitignore

@@ -0,0 +1 @@
+.coverage

CONTRIBUTING.md

@@ -9,7 +9,7 @@ An easy way to install all required software is to run
 ```bash
 conda create -n snakemake-storage-plugin-rucio-dev -c conda-forge python-gfal2 voms poetry
 conda activate snakemake-storage-plugin-rucio-dev
-poetry install --with=dev
+poetry install --extras dev
 pre-commit install
 ```
 
@@ -29,7 +29,7 @@ pre-commit run --all
 The tests can be run with the command:
 
 ```bash
-pytest tests/tests.py
+pytest tests/tests.py --cov
 ```
 
 If no [`RUCIO_CONFIG`](https://rucio.github.io/documentation/user/configuring_the_client#rucio_config)

poetry.lock

@@ -2,36 +2,49 @@
 requires = [ "poetry-core",]
 build-backend = "poetry.core.masonry.api"
 
-[tool.poetry]
+[project]
 name = "snakemake-storage-plugin-rucio"
 version = "0.1.1"
 description = "A Snakemake storage plugin that handles files available through Rucio."
 authors = [
-    "Bouwe Andela <[email protected]>",
-    "Valentin Pestel <[email protected]>",
+    { name = "Bouwe Andela", email = "[email protected]" },
+    { name = "Valentin Pestel", email = "[email protected]" },
 ]
 readme = "README.md"
-repository = "https://github.com/bouweandela/snakemake-storage-plugin-rucio"
-documentation = "https://snakemake.github.io/snakemake-plugin-catalog/plugins/storage/rucio.html"
-license = "Apache-2.0"
+license = { text = "Apache-2.0" }
+requires-python = ">=3.11,<4.0"
 keywords = [
     "snakemake",
     "plugin",
     "storage",
     "rucio",
 ]
+dependencies = [
+    "rucio>=36",
+    "snakemake>=9.5.1",
+    "snakemake-interface-common>=1.18.0",
+    "snakemake-interface-storage-plugins>=4.2.1",
+]
+
+[project.optional-dependencies]
+dev = [
+    "coverage>=7",
+    "pre-commit>=4",
+    "pytest>=8",
+    "pytest-cov>=6",
+]
+
+[project.urls]
+repository = "https://github.com/bouweandela/snakemake-storage-plugin-rucio"
+documentation = "https://snakemake.github.io/snakemake-plugin-catalog/plugins/storage/rucio.html"
+
+
+[tool.coverage.run]
+source = ["snakemake_storage_plugin_rucio"]
+branch = true
 
-[tool.poetry.dependencies]
-python = ">=3.11,<4"
-snakemake = ">=9.5.1"
-snakemake-interface-common = ">=1.18.0"
-snakemake-interface-storage-plugins = ">=4.2.1"
-rucio = ">=36"
-
-[tool.poetry.group.dev.dependencies]
-coverage = ">=7"
-pre-commit = ">=4"
-pytest = ">=8"
+[tool.coverage.report]
+show_missing = true
 
 [tool.ruff.lint]
 select = ["ALL"]

pyproject.toml

@@ -266,7 +266,7 @@ async def inventory(self, cache: IOCacheStorageInterface) -> None:
     def _handle(self, cache: IOCacheStorageInterface, files: Sequence[str]) -> None:
         """Add a sequence of files to the cache."""
         dids = [{"scope": self.scope, "name": f} for f in files]
-        for file, meta in zip(files, self.client.get_metadata_bulk(dids)):
+        for file, meta in zip(files, self.client.get_metadata_bulk(dids), strict=True):
             key = self.cache_key(f"{self.scope}/{file}")
             cache.mtime[key] = Mtime(storage=meta["updated_at"].timestamp())
             cache.size[key] = meta["bytes"]

snakemake_storage_plugin_rucio/__init__.py

@@ -3,7 +3,7 @@
 from __future__ import annotations
 
 import os
-from datetime import datetime, timezone
+from datetime import UTC, datetime
 from pathlib import Path
 
 import pytest
@@ -70,7 +70,7 @@ class TestStorageWrite(TestStorageRucioBase):
 
     def get_query(self, tmp_path: Path) -> str:  # noqa: ARG002
         """Return a query for a new file with a unique name."""
-        file = f"snakemake-storage-plugin-test-{datetime.now(timezone.utc):%Y%m%dT%H%M%S%f}.txt"
+        file = f"snakemake-storage-plugin-test-{datetime.now(UTC):%Y%m%dT%H%M%S%f}.txt"
         scope = "testing"
         return f"rucio://{scope}/{file}"