From 4dd4bfdcab324dbbe32e43fb22d4a7bc8f1ece11 Mon Sep 17 00:00:00 2001 From: Sam Freesun Friedman Date: Tue, 4 Mar 2025 14:02:30 -0500 Subject: [PATCH] t2 random --- ml4h/tensormap/ukb/mri_brain.py | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/ml4h/tensormap/ukb/mri_brain.py b/ml4h/tensormap/ukb/mri_brain.py index 8592a0c94..c200e2997 100755 --- a/ml4h/tensormap/ukb/mri_brain.py +++ b/ml4h/tensormap/ukb/mri_brain.py @@ -477,6 +477,16 @@ def random_mni_slice_tensor(tm, hd5, dependents={}): dependent_map=axial_index_map, ) +t1_mni_random_slice_32_160 = TensorMap( + 't1_mni_random_slice', + Interpretation.CONTINUOUS, + shape=(192, 192, 1), + path_prefix='ukb_brain_mri/T1_brain_to_MNI/', + tensor_from_file=_random_slice_bounded(32, 160), + normalization=ZeroMeanStd1(), + dependent_map=axial_index_map, +) + t1_random_slice = TensorMap( 't1_random_slice', Interpretation.CONTINUOUS, @@ -507,6 +517,16 @@ def random_mni_slice_tensor(tm, hd5, dependents={}): dependent_map=axial_index_map, ) +t2_flair_random_slice_32_192 = TensorMap( + 't2_flair_random_slice', + Interpretation.CONTINUOUS, + shape=(192, 256, 1), + path_prefix='ukb_brain_mri/T2_FLAIR_orig_defaced/', + tensor_from_file=_random_slice_bounded(32, 192), + normalization=ZeroMeanStd1(), + dependent_map=axial_index_map, +) + t2_flair_random_slice_127 = TensorMap( 't2_flair_random_slice', Interpretation.CONTINUOUS,