diff --git a/public/difg_msk_2023/data_clinical_patient.txt b/public/difg_msk_2023/data_clinical_patient.txt index 09220f2802..978fc03bf1 100644 --- a/public/difg_msk_2023/data_clinical_patient.txt +++ b/public/difg_msk_2023/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:81ec08e1ce61ebe8c15333922a0c4b71dc430701a85eedb052d6c09114709358 -size 6486 +oid sha256:b9e3576e4d1b34741188e0a518420b119b429cd44d845a411599fdf23836161a +size 6283 diff --git a/public/difg_msk_2023/data_clinical_sample.txt b/public/difg_msk_2023/data_clinical_sample.txt index 8e057eb613..43ef3ce3d7 100644 --- a/public/difg_msk_2023/data_clinical_sample.txt +++ b/public/difg_msk_2023/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:82fca9dfb4b96effb820c6da5f150a07bd261ca839ec00f2d08fcb6a69e39f32 -size 15292 +oid sha256:687f96023b84b9b27bc5a44c7b544c3a6566cca65cdbe7aee09bcea462d97b77 +size 16030 diff --git a/public/difg_msk_2023/data_gene_panel_matrix.txt b/public/difg_msk_2023/data_gene_panel_matrix.txt index 378065bf0a..fdcfb6cc6c 100644 --- a/public/difg_msk_2023/data_gene_panel_matrix.txt +++ b/public/difg_msk_2023/data_gene_panel_matrix.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:4688cf9d621bfe988398ea3af9c022a0adc57f33285a2f9ddf29178ae06600ab -size 2800 +oid sha256:a88375c8b6714d1be1e1a0d8402780cb32d69820ad0b314d8b6e318510d78634 +size 3550 diff --git a/public/difg_msk_2023/data_sv.txt b/public/difg_msk_2023/data_sv.txt index 0e1e0c03f3..4d173d8e60 100644 --- a/public/difg_msk_2023/data_sv.txt +++ b/public/difg_msk_2023/data_sv.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:2a2eb1b018c629d54471c8dd062720f0422181a17e702d75ef8e3dd66f610923 -size 3538 +oid sha256:5ae1943c631b8171600d1c1139fde3bbff2cc1a9d63f96bf1b2198156f596e45 +size 3242 diff --git a/public/difg_msk_2023/data_timeline.txt b/public/difg_msk_2023/data_timeline.txt deleted file mode 100644 index 8a1d4abb16..0000000000 --- a/public/difg_msk_2023/data_timeline.txt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:6e6f9ac6f99fc66fe0b4ffad8a56b75c81ad5b6e766f23f382e0b7217c81bb9d -size 260230 diff --git a/public/difg_msk_2023/meta_study.txt b/public/difg_msk_2023/meta_study.txt index 239cde25f0..8ce0c57ed3 100644 --- a/public/difg_msk_2023/meta_study.txt +++ b/public/difg_msk_2023/meta_study.txt @@ -1,4 +1,6 @@ type_of_cancer: difg cancer_study_identifier: difg_msk_2023 -name: Diffuse Glioma (MSK, 2023) -description: Targeted sequencing of 73 diffuse gliomas and their matched normal pairs via MSK-IMPACT platforms. The data is available on Synapse. +name: Diffuse Glioma (MSK, Clin Cancer Res 2024) +description: Targeted sequencing of 73 diffuse gliomas and their matched normal pairs via MSK-IMPACT. The data is available on Synapse. +pmid: 37910594 +citation: Ankush et al. Clin Cancer Res 2024 diff --git a/public/difg_msk_2023/meta_timeline.txt b/public/difg_msk_2023/meta_timeline.txt deleted file mode 100644 index cd79a11d2b..0000000000 --- a/public/difg_msk_2023/meta_timeline.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: difg_msk_2023 -genetic_alteration_type: CLINICAL -datatype: TIMELINE -data_filename: data_timeline.txt diff --git a/public/msk_spectrum_tme_2022/data_clinical_sample.txt b/public/msk_spectrum_tme_2022/data_clinical_sample.txt index 674424d16c..d543246715 100644 --- a/public/msk_spectrum_tme_2022/data_clinical_sample.txt +++ b/public/msk_spectrum_tme_2022/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:268389b468834cb37ea4280a1105369fba0213c21d1f307dd8e29f711e9757c2 -size 24861 +oid sha256:25e161dde53ab90fd10e03b6399313a547ca9b3557a174f8c49be0f923e14b2c +size 23799 diff --git a/public/msk_spectrum_tme_2022/data_clinical_supp.txt b/public/msk_spectrum_tme_2022/data_clinical_supp.txt index 25a6546f91..37d2ab9859 100644 --- a/public/msk_spectrum_tme_2022/data_clinical_supp.txt +++ b/public/msk_spectrum_tme_2022/data_clinical_supp.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:34e4c5e165db45609e8087a9f21f5e15a35968a992f334ae5be7a29565aaf098 +oid sha256:264b5f5053ca7231ee554bf00d0ff48c30445dafd6110f1c6dfd735d1d0b535b size 1800 diff --git a/public/msk_spectrum_tme_2022/data_gene_panel_matrix.txt b/public/msk_spectrum_tme_2022/data_gene_panel_matrix.txt index 65984890ea..f95fa26076 100644 --- a/public/msk_spectrum_tme_2022/data_gene_panel_matrix.txt +++ b/public/msk_spectrum_tme_2022/data_gene_panel_matrix.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:3fdba5894e98c7d92759cab4226550564371bbb4e4815808c5749277fafd1ebf -size 2059 +oid sha256:d61da4f0808f8eeae9094a75bf48432892b5f21ccade382b8a71545aafb2c728 +size 3539 diff --git a/public/msk_spectrum_tme_2022/meta_study.txt b/public/msk_spectrum_tme_2022/meta_study.txt index ef4b3c1171..a46a1e46c3 100755 --- a/public/msk_spectrum_tme_2022/meta_study.txt +++ b/public/msk_spectrum_tme_2022/meta_study.txt @@ -1,7 +1,7 @@ type_of_cancer: hgsoc cancer_study_identifier: msk_spectrum_tme_2022 name: Ovarian Cancer - MSK SPECTRUM (MSK, Nature 2022) -description: Multi-region, multi-modal profiling of 42 untreated high-grade serous ovarian cancer (HGSOC) patients. This study reports an integrative analysis of mutational processes and their impact on the tumor microenvironment using single-cell RNA sequencing, whole-genome sequencing, targeted sequencing (MSK-IMPACT), digital histopathology and multiplexed immunofluorescence. The study is part of a prospective research program to understand the spatio-temporal determinants of HGSOC evolution, treatment and response (MSK SPECTRUM: Memorial Sloan Kettering - SPatio-temporal Evolution in Cancer TRaced Using Multimodalities). +description: Multi-region, multi-modal profiling of 42 untreated high-grade serous ovarian cancer (HGSOC) tumor/normal pairs. This study reports an integrative analysis of mutational processes and their impact on the tumor microenvironment using single-cell RNA sequencing, whole-genome sequencing, targeted sequencing (MSK-IMPACT), digital histopathology and multiplexed immunofluorescence. The study is part of a prospective research program to understand the spatio-temporal determinants of HGSOC evolution, treatment and response (MSK SPECTRUM: Memorial Sloan Kettering - SPatio-temporal Evolution in Cancer TRaced Using Multimodalities). groups: PUBLIC short_name: SPECTRUM (MSK, 2022) citation: Vázquez-García, Uhlitz et al. Nature 2022