create a pyqi-based version of the sra_to_qiime script

[gregcaporaso]

The sra_to_qiime.py script in this gist should be converted to be a pyqi Command. (Don't worry about creating an Interface for it right now.)

Start by installing pyqi and then working through the pyqi getting started tutorials. Then create a new SraToQiime pyqi Command, and add it to this repository.

[casaburi]

Here is the new version of the sra_to_qiime.py converted for pyqi.

https://gist.github.com/casaburi/5709681#file-sra_to_qiime-py

[gregcaporaso]

Can you add this to your fork of the meta-miRNA repository and then submit
a pull request?

On Fri, Oct 11, 2013 at 2:25 PM, Giorgio Casaburi
[email protected]:

Here is the new version of the sra_to_qiime.py converted for pyqi.

https://gist.github.com/casaburi/5709681#file-sra_to_qiime-py

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Reply to this email directly or view it on GitHubhttps://github.com//issues/1#issuecomment-26175550
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[casaburi]

I thought I already did that, it should probably show up a pull request now.

Def. Quota Greg Caporaso [email protected]:

Can you add this to your fork of the meta-miRNA repository and then submit
a pull request?

On Fri, Oct 11, 2013 at 2:25 PM, Giorgio Casaburi
[email protected]:

Here is the new version of the sra_to_qiime.py converted for pyqi.

https://gist.github.com/casaburi/5709681#file-sra_to_qiime-py

?
Reply to this email directly or view it on
GitHubhttps://github.com//issues/1#issuecomment-26175550
.

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Giorgio Casaburi, M.S., Ph.D.c
CEINGE-Biotecnologie Avanzate
Via Gaetano Salvatore,486 - 80145 Napoli, Italy
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e-mail: [email protected]

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