Contig stitcher: fix the issue with overreaching bad_contigs

Donaim · Donaim · commit 417ef9a89a50 · 2024-02-02T10:43:05.000-08:00
diff --git a/micall/core/plot_contigs.py b/micall/core/plot_contigs.py
@@ -772,7 +772,7 @@ def is_ancestor(contig_name, other_names):
             final_nodes.remove(contig_name)
 
     for contig_name in final_nodes:
-        if any(contig_name in transitive_parent_graph.get(bad, []) for bad in bad_contigs):
+        if any(contig_name in eqv_morphism_graph.get(bad, []) for bad in bad_contigs):
             continue
 
         if any(contig_name in eqv_morphism_graph.get(temp_name, [temp_name]) for temp_name in overlaps_list):
diff --git a/micall/tests/data/stitcher_plots/test_cross_alignment_around_small_insertion.svg b/micall/tests/data/stitcher_plots/test_cross_alignment_around_small_insertion.svg
@@ -188,23 +188,23 @@
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 <g transform="translate(33.105802047781566 0)">
-<text x="0" y="0" font-size="10" font-family="monospace" text-anchor="middle">1.5</text>
+<text x="0" y="0" font-size="10" font-family="monospace" text-anchor="middle">1.1</text>
 </g>
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 <g transform="translate(0 -30.0)">
 <g transform="translate(0.0 0)">
-<rect x="16.552901023890783" y="-10" width="33.10580204778157" height="10" fill="yellow" stroke="yellow" />
-<g transform="translate(33.105802047781566 0)">
-<text x="0" y="0" font-size="10" font-family="monospace" text-anchor="middle">1.1</text>
+<rect x="16.552901023890783" y="-10" width="39.72696245733788" height="10" fill="yellow" stroke="yellow" />
+<g transform="translate(36.41638225255973 0)">
+<text x="0" y="0" font-size="10" font-family="monospace" text-anchor="middle">1.3</text>
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 <g transform="translate(0 -10.0)">
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-<rect x="16.552901023890783" y="-10" width="39.72696245733788" height="10" fill="yellow" stroke="yellow" />
-<g transform="translate(36.41638225255973 0)">
-<text x="0" y="0" font-size="10" font-family="monospace" text-anchor="middle">1.3</text>
+<rect x="16.552901023890783" y="-10" width="33.10580204778157" height="10" fill="yellow" stroke="yellow" />
+<g transform="translate(33.105802047781566 0)">
+<text x="0" y="0" font-size="10" font-family="monospace" text-anchor="middle">1.5</text>
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