Do not pass merged_contigs_csv to denovo

Donaim · Donaim · commit 57603b7e5182 · 2025-04-22T10:09:48.000-07:00
diff --git a/micall/drivers/sample.py b/micall/drivers/sample.py
@@ -421,7 +421,7 @@ def run_denovo(self, excluded_seeds):
                Path(self.trimmed2_fastq),
                Path(self.unstitched_contigs_fasta),
                Path(self.scratch_path),
-               Path(self.merged_contigs_csv),
+               None,
                )
 
         with open(self.unstitched_contigs_csv, 'w') as unstitched_contigs_csv, \

Original file line number	Diff line number	Diff line change
`@@ -421,7 +421,7 @@ def run_denovo(self, excluded_seeds):`
`421`	`421`	`Path(self.trimmed2_fastq),`
`422`	`422`	`Path(self.unstitched_contigs_fasta),`
`423`	`423`	`Path(self.scratch_path),`
`424`		`- Path(self.merged_contigs_csv),`
	`424`	`+ None,`
`425`	`425`	`)`
`426`	`426`
`427`	`427`	`with open(self.unstitched_contigs_csv, 'w') as unstitched_contigs_csv, \`