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Contig stitcher: fix test input name
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micall/tests/test_contig_stitcher.py

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@@ -1028,7 +1028,7 @@ def test_forward_and_reverse_match(projects, visualizer):
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def test_main_invocation(exact_aligner, tmp_path, hcv_db):
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pwd = os.path.dirname(__file__)
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contigs = os.path.join(pwd, "data", "exact_parts_contigs.csv")
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contigs = os.path.join(pwd, "data", "exact_parts_contigs.fasta")
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stitched_contigs = os.path.join(tmp_path, "stitched.csv")
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stitcher.main([contigs, stitched_contigs])
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@@ -1048,7 +1048,7 @@ def test_main_invocation(exact_aligner, tmp_path, hcv_db):
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def test_visualizer_simple(exact_aligner, tmp_path, hcv_db):
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pwd = os.path.dirname(__file__)
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contigs = os.path.join(pwd, "data", "exact_parts_contigs.csv")
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contigs = os.path.join(pwd, "data", "exact_parts_contigs.fasta")
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stitched_contigs = os.path.join(tmp_path, "stitched.csv")
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plot = os.path.join(tmp_path, "exact_parts_contigs.plot.svg")
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stitcher.main([contigs, stitched_contigs, "--debug", "--plot", plot])

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