@@ -1028,7 +1028,7 @@ def test_forward_and_reverse_match(projects, visualizer):
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def test_main_invocation (exact_aligner , tmp_path , hcv_db ):
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pwd = os .path .dirname (__file__ )
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- contigs = os .path .join (pwd , "data" , "exact_parts_contigs.csv " )
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+ contigs = os .path .join (pwd , "data" , "exact_parts_contigs.fasta " )
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stitched_contigs = os .path .join (tmp_path , "stitched.csv" )
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stitcher .main ([contigs , stitched_contigs ])
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@@ -1048,7 +1048,7 @@ def test_main_invocation(exact_aligner, tmp_path, hcv_db):
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def test_visualizer_simple (exact_aligner , tmp_path , hcv_db ):
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pwd = os .path .dirname (__file__ )
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- contigs = os .path .join (pwd , "data" , "exact_parts_contigs.csv " )
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+ contigs = os .path .join (pwd , "data" , "exact_parts_contigs.fasta " )
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stitched_contigs = os .path .join (tmp_path , "stitched.csv" )
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plot = os .path .join (tmp_path , "exact_parts_contigs.plot.svg" )
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stitcher .main ([contigs , stitched_contigs , "--debug" , "--plot" , plot ])
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