@@ -1028,7 +1028,7 @@ def test_forward_and_reverse_match(projects, visualizer):
10281028
10291029def test_main_invocation (exact_aligner , tmp_path , hcv_db ):
10301030 pwd = os .path .dirname (__file__ )
1031- contigs = os .path .join (pwd , "data" , "exact_parts_contigs.csv " )
1031+ contigs = os .path .join (pwd , "data" , "exact_parts_contigs.fasta " )
10321032 stitched_contigs = os .path .join (tmp_path , "stitched.csv" )
10331033 stitcher .main ([contigs , stitched_contigs ])
10341034
@@ -1048,7 +1048,7 @@ def test_main_invocation(exact_aligner, tmp_path, hcv_db):
10481048
10491049def test_visualizer_simple (exact_aligner , tmp_path , hcv_db ):
10501050 pwd = os .path .dirname (__file__ )
1051- contigs = os .path .join (pwd , "data" , "exact_parts_contigs.csv " )
1051+ contigs = os .path .join (pwd , "data" , "exact_parts_contigs.fasta " )
10521052 stitched_contigs = os .path .join (tmp_path , "stitched.csv" )
10531053 plot = os .path .join (tmp_path , "exact_parts_contigs.plot.svg" )
10541054 stitcher .main ([contigs , stitched_contigs , "--debug" , "--plot" , plot ])
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