Remove structured logger module

Author: Donaim

micall/core/denovo.py

@@ -21,7 +21,6 @@
 from micall.core.project_config import ProjectConfig
 from micall.core.contig_stitcher import GenotypedContig, stitch_consensus, with_fresh_context
 from micall.core.plot_contigs import plot_stitcher_coverage
-from micall.utils.structured_logger import add_structured_handler
 
 IVA = "iva"
 DEFAULT_DATABASE = os.path.join(os.path.dirname(__file__),

micall/tests/test_contig_stitcher.py

@@ -8,7 +8,6 @@
 from micall.core.contig_stitcher import split_contigs_with_gaps, stitch_contigs, GenotypedContig, merge_intervals, find_covered_contig, stitch_consensus, calculate_concordance, align_all_to_reference, main, AlignedContig, disambiguate_concordance
 from micall.core.plot_contigs import plot_stitcher_coverage
 from micall.tests.utils import MockAligner, fixed_random_seed
-from micall.utils.structured_logger import add_structured_handler
 from micall.tests.test_denovo import check_hcv_db # activates the fixture