Create submitjob.sh

Author: Svetlana-T

submitjob.sh

@@ -0,0 +1,42 @@
+#!/bin/bash
+# Submit this script using this command:
+#   qsub -v ver=nothing submitjob.sh
+# ...where you replace 'nothing' with the name of the binary ('openmp', 
+# 'parallel', or anything else that it is named)
+# Then 'ver' (short for version) becomes an environment 
+# variable, available to this script as '$ver' below.
+
+#PBS -P w28
+#PBS -q normalsl
+# -l other=hyperthread
+#PBS -l ncpus=8
+#PBS -l mem=16GB
+#PBS -l walltime=2:00:00
+#PBS -l wd
+#PBS -l jobfs=2GB
+#PBS -M [email protected]
+#PBS -m abe
+
+ulimit -s unlimited
+export OMP_NUM_THREADS=8 # <-- Important
+export DIROUT=`pwd`/OutputV8.$PBS_JOBID #  <-- Dir where to put the results
+
+mkdir $DIROUT
+module load intel-fc/2019.3.199
+module load netcdf
+module load intel-mkl
+
+##cd $PBS_JOBFS
+
+cp QIBT_exp04_*.f90 $DIROUT
+cp $ver.sh $DIROUT
+cp Comp*.sh $DIROUT
+./$ver 1 2 1979 2 2 1979 $PBS_JOBFS/ # drier day
+#./$ver 5 2 2011 6 2 2011 $PBS_JOBFS/ # rainy day
+
+gprof -l ./$ver > $ver.prof.1.out
+cp $PBS_JOBFS/* $DIROUT
+mv $ver.prof.1.out $DIROUT
+
+mv gmon.out $DIROUT
+mv $ver.prof.1.out $DIROUT