diff --git a/.github/workflows/immediate.yml b/.github/workflows/immediate.yml index 586a8c9a..83d0bfa9 100644 --- a/.github/workflows/immediate.yml +++ b/.github/workflows/immediate.yml @@ -37,9 +37,12 @@ jobs: - name: test installation run: | + python --version + snakemake --version ./asscom2 --version ./asscom2 --help + - name: dry run run: | ./asscom2 --config input_genomes="tests/E._faecium/*.fna" --dry-run diff --git a/asscom2 b/asscom2 index 4a6ffdf0..050a0084 100755 --- a/asscom2 +++ b/asscom2 @@ -42,8 +42,8 @@ NAME SYNOPSIS asscom2 [ --config KEY=VALUE [KEY2=VALUE]... ] [ --until RULE [RULE2]... ] - [ --dry-run ] - [ --version ] [ --help ] + [ --dry-run ] + [ --version ] [ --help ] DESCRIPTION Analyses bacterial and archaeal genomes.