From 045e456b574fdfdbed5fc1c9a4e1bb43aed4ea95 Mon Sep 17 00:00:00 2001 From: "Carl M. Kobel" Date: Mon, 6 May 2024 14:50:03 +0200 Subject: [PATCH] amend --- .github/workflows/immediate.yml | 3 +++ asscom2 | 4 ++-- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/.github/workflows/immediate.yml b/.github/workflows/immediate.yml index 586a8c9a..83d0bfa9 100644 --- a/.github/workflows/immediate.yml +++ b/.github/workflows/immediate.yml @@ -37,9 +37,12 @@ jobs: - name: test installation run: | + python --version + snakemake --version ./asscom2 --version ./asscom2 --help + - name: dry run run: | ./asscom2 --config input_genomes="tests/E._faecium/*.fna" --dry-run diff --git a/asscom2 b/asscom2 index 4a6ffdf0..050a0084 100755 --- a/asscom2 +++ b/asscom2 @@ -42,8 +42,8 @@ NAME SYNOPSIS asscom2 [ --config KEY=VALUE [KEY2=VALUE]... ] [ --until RULE [RULE2]... ] - [ --dry-run ] - [ --version ] [ --help ] + [ --dry-run ] + [ --version ] [ --help ] DESCRIPTION Analyses bacterial and archaeal genomes.