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mr-cmr-c
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add CWL v1.2.0-dev3
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190 files changed

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Diff for: ‎.gitignore

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@@ -2,3 +2,4 @@ target/
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.classpath
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.project
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.settings
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/bin/

Diff for: ‎pom.xml

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@@ -7,7 +7,7 @@
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<packaging>jar</packaging>
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<name>Common Workflow Language SDK</name>
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<description><![CDATA[This project contains Java objects and utilities auto-generated by <a href="https://github.com/common-workflow-language/schema_salad">Schema Salad</a> for parsing documents corresponding to the https://w3id.org/cwl/cwl# schema.]]></description>
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<version>1.2.0.dev1-SNAPSHOT</version>
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<version>1.2.0.dev3-SNAPSHOT</version>
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<properties>
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<commonslang.version>3.7</commonslang.version>

Diff for: ‎src/main/java/org/w3id/cwl/cwl1_2_0_dev3/Any.java

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package org.w3id.cwl.cwl1_2_0_dev3;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.ValidationException;
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public enum Any {
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ANY("Any");
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private static String[] symbols = new String[] {"Any"};
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private String docVal;
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private Any(final String docVal) {
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this.docVal = docVal;
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}
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public static Any fromDocumentVal(final String docVal) {
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for (final Any val : Any.values()) {
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if (val.docVal.equals(docVal)) {
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return val;
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}
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}
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throw new ValidationException(String.format("Expected one of %s", Any.symbols, docVal));
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}
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}

Diff for: ‎src/main/java/org/w3id/cwl/cwl1_2_0_dev3/ArraySchema.java

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package org.w3id.cwl.cwl1_2_0_dev3;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.Savable;
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/**
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* Auto-generated interface for <I>https://w3id.org/cwl/salad#ArraySchema</I><br>
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* This interface is implemented by {@link ArraySchemaImpl}<br>
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*/
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public interface ArraySchema extends Savable {
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/**
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* Getter for property <I>https://w3id.org/cwl/salad#items</I><br>
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*
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* <BLOCKQUOTE>
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*
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* Defines the type of the array elements. *
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*
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* </BLOCKQUOTE>
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*/
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Object getItems();
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/**
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* Getter for property <I>https://w3id.org/cwl/salad#type</I><br>
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*
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* <BLOCKQUOTE>
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*
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* Must be `array` *
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*
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* </BLOCKQUOTE>
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*/
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enum_d062602be0b4b8fd33e69e29a841317b6ab665bc getType();
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}

Diff for: ‎src/main/java/org/w3id/cwl/cwl1_2_0_dev3/ArraySchemaImpl.java

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package org.w3id.cwl.cwl1_2_0_dev3;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.LoaderInstances;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.LoadingOptions;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.LoadingOptionsBuilder;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.SavableImpl;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.ValidationException;
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/** Auto-generated class implementation for <I>https://w3id.org/cwl/salad#ArraySchema</I><br> */
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public class ArraySchemaImpl extends SavableImpl implements ArraySchema {
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private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
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private java.util.Map<String, Object> extensionFields_ = new java.util.HashMap<String, Object>();
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private Object items;
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/**
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* Getter for property <I>https://w3id.org/cwl/salad#items</I><br>
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*
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* <BLOCKQUOTE>
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*
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* Defines the type of the array elements. *
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*
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* </BLOCKQUOTE>
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*/
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public Object getItems() {
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return this.items;
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}
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private enum_d062602be0b4b8fd33e69e29a841317b6ab665bc type;
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/**
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* Getter for property <I>https://w3id.org/cwl/salad#type</I><br>
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*
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* <BLOCKQUOTE>
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*
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* Must be `array` *
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*
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* </BLOCKQUOTE>
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*/
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public enum_d062602be0b4b8fd33e69e29a841317b6ab665bc getType() {
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return this.type;
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}
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/**
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* Used by {@link org.w3id.cwl.cwl1_2_0_dev3.utils.RootLoader} to construct instances of
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* ArraySchemaImpl.
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*
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* @param __doc_ Document fragment to load this record object from (presumably a {@link
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* java.util.Map}).
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* @param __baseUri_ Base URI to generate child document IDs against.
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* @param __loadingOptions Context for loading URIs and populating objects.
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* @param __docRoot_ ID at this position in the document (if available) (maybe?)
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* @throws ValidationException If the document fragment is not a {@link java.util.Map} or
54+
* validation of fields fails.
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*/
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public ArraySchemaImpl(
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final Object __doc_,
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final String __baseUri_,
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LoadingOptions __loadingOptions,
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final String __docRoot_) {
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super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
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// Prefix plumbing variables with '__' to reduce likelihood of collision with
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// generated names.
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String __baseUri = __baseUri_;
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String __docRoot = __docRoot_;
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if (!(__doc_ instanceof java.util.Map)) {
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throw new ValidationException("ArraySchemaImpl called on non-map");
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}
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final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
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final java.util.List<ValidationException> __errors =
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new java.util.ArrayList<ValidationException>();
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if (__loadingOptions != null) {
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this.loadingOptions_ = __loadingOptions;
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}
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Object items;
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try {
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items =
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LoaderInstances
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.uri_union_of_PrimitiveType_or_RecordSchema_or_EnumSchema_or_ArraySchema_or_StringInstance_or_array_of_union_of_PrimitiveType_or_RecordSchema_or_EnumSchema_or_ArraySchema_or_StringInstance_False_True_2
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.loadField(__doc.get("items"), __baseUri, __loadingOptions);
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} catch (ValidationException e) {
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items = null; // won't be used but prevents compiler from complaining.
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final String __message = "the `items` field is not valid because:";
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__errors.add(new ValidationException(__message, e));
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}
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enum_d062602be0b4b8fd33e69e29a841317b6ab665bc type;
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try {
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type =
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LoaderInstances.typedsl_enum_d062602be0b4b8fd33e69e29a841317b6ab665bc_2.loadField(
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__doc.get("type"), __baseUri, __loadingOptions);
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} catch (ValidationException e) {
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type = null; // won't be used but prevents compiler from complaining.
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final String __message = "the `type` field is not valid because:";
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__errors.add(new ValidationException(__message, e));
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}
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if (!__errors.isEmpty()) {
97+
throw new ValidationException("Trying 'RecordField'", __errors);
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}
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this.items = (Object) items;
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this.type = (enum_d062602be0b4b8fd33e69e29a841317b6ab665bc) type;
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}
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}

Diff for: ‎src/main/java/org/w3id/cwl/cwl1_2_0_dev3/CWLType.java

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package org.w3id.cwl.cwl1_2_0_dev3;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.ValidationException;
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public enum CWLType {
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FILE("File"),
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DIRECTORY("Directory");
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private static String[] symbols = new String[] {"File", "Directory"};
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private String docVal;
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private CWLType(final String docVal) {
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this.docVal = docVal;
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}
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public static CWLType fromDocumentVal(final String docVal) {
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for (final CWLType val : CWLType.values()) {
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if (val.docVal.equals(docVal)) {
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return val;
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}
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}
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throw new ValidationException(String.format("Expected one of %s", CWLType.symbols, docVal));
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}
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}

Diff for: ‎src/main/java/org/w3id/cwl/cwl1_2_0_dev3/CWLVersion.java

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package org.w3id.cwl.cwl1_2_0_dev3;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.ValidationException;
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public enum CWLVersion {
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DRAFT_2("draft-2"),
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DRAFT_3_DEV1("draft-3.dev1"),
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DRAFT_3_DEV2("draft-3.dev2"),
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DRAFT_3_DEV3("draft-3.dev3"),
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DRAFT_3_DEV4("draft-3.dev4"),
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DRAFT_3_DEV5("draft-3.dev5"),
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DRAFT_3("draft-3"),
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DRAFT_4_DEV1("draft-4.dev1"),
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DRAFT_4_DEV2("draft-4.dev2"),
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DRAFT_4_DEV3("draft-4.dev3"),
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V1_0_DEV4("v1.0.dev4"),
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V1_0("v1.0"),
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V1_1_0_DEV1("v1.1.0-dev1"),
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V1_1("v1.1"),
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V1_2_0_DEV1("v1.2.0-dev1"),
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V1_2_0_DEV2("v1.2.0-dev2"),
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V1_2_0_DEV3("v1.2.0-dev3");
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private static String[] symbols =
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new String[] {
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"draft-2",
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"draft-3.dev1",
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"draft-3.dev2",
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"draft-3.dev3",
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"draft-3.dev4",
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"draft-3.dev5",
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"draft-3",
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"draft-4.dev1",
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"draft-4.dev2",
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"draft-4.dev3",
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"v1.0.dev4",
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"v1.0",
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"v1.1.0-dev1",
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"v1.1",
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"v1.2.0-dev1",
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"v1.2.0-dev2",
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"v1.2.0-dev3"
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};
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private String docVal;
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private CWLVersion(final String docVal) {
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this.docVal = docVal;
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}
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public static CWLVersion fromDocumentVal(final String docVal) {
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for (final CWLVersion val : CWLVersion.values()) {
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if (val.docVal.equals(docVal)) {
53+
return val;
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}
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}
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throw new ValidationException(String.format("Expected one of %s", CWLVersion.symbols, docVal));
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}
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}

Diff for: ‎src/main/java/org/w3id/cwl/cwl1_2_0_dev3/CommandInputArraySchema.java

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package org.w3id.cwl.cwl1_2_0_dev3;
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import org.w3id.cwl.cwl1_2_0_dev3.utils.Savable;
4+
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/**
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* Auto-generated interface for <I>https://w3id.org/cwl/cwl#CommandInputArraySchema</I><br>
7+
* This interface is implemented by {@link CommandInputArraySchemaImpl}<br>
8+
*/
9+
public interface CommandInputArraySchema
10+
extends InputArraySchema, CommandInputSchema, CommandLineBindable, Savable {
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/**
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* Getter for property <I>https://w3id.org/cwl/cwl#IOSchema/name</I><br>
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*
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* <BLOCKQUOTE>
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*
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* The identifier for this type *
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*
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* </BLOCKQUOTE>
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*/
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java.util.Optional<String> getName();
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/**
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* Getter for property <I>https://w3id.org/cwl/salad#items</I><br>
23+
*
24+
* <BLOCKQUOTE>
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*
26+
* Defines the type of the array elements. *
27+
*
28+
* </BLOCKQUOTE>
29+
*/
30+
Object getItems();
31+
/**
32+
* Getter for property <I>https://w3id.org/cwl/salad#type</I><br>
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*
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* <BLOCKQUOTE>
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*
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* Must be `array` *
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*
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* </BLOCKQUOTE>
39+
*/
40+
enum_d062602be0b4b8fd33e69e29a841317b6ab665bc getType();
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/**
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* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><br>
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*
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* <BLOCKQUOTE>
45+
*
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* A short, human-readable label of this object. *
47+
*
48+
* </BLOCKQUOTE>
49+
*/
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java.util.Optional<String> getLabel();
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/**
52+
* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><br>
53+
*
54+
* <BLOCKQUOTE>
55+
*
56+
* A documentation string for this object, or an array of strings which should be concatenated. *
57+
*
58+
* </BLOCKQUOTE>
59+
*/
60+
Object getDoc();
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/**
62+
* Getter for property <I>https://w3id.org/cwl/cwl#CommandLineBindable/inputBinding</I><br>
63+
*
64+
* <BLOCKQUOTE>
65+
*
66+
* Describes how to turn this object into command line arguments. *
67+
*
68+
* </BLOCKQUOTE>
69+
*/
70+
java.util.Optional<CommandLineBinding> getInputBinding();
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}

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