docker test: run single-threaded

and skip another external file test

Author: mr-c

Makefile

@@ -157,11 +157,11 @@ diff-cover: coverage.xml
 diff-cover.html: coverage.xml
 	diff-cover --compare-branch=main $^ --html-report $@
 
-## test                   : run the ${MODULE} test suite
+## test                   : run the cwltool test suite
 test: check-python3 $(PYSOURCES)
 	python -m pytest -rs ${PYTEST_EXTRA}
 
-## testcov                : run the ${MODULE} test suite and collect coverage
+## testcov                : run the cwltool test suite and collect coverage
 testcov: check-python3 $(PYSOURCES)
 	python -m pytest -rs --cov --cov-config=.coveragerc --cov-report= ${PYTEST_EXTRA}
 

build-cwltool-docker.sh

@@ -7,4 +7,4 @@ docker run -t -v /var/run/docker.sock:/var/run/docker.sock \
 	-v /tmp:/tmp \
 	-v "$PWD":/tmp/cwltool \
 	quay.io/commonwl/cwltool_module /bin/sh -c \
-	"apk add gcc bash && pip install -r/tmp/cwltool/test-requirements.txt ; pytest -k 'not (test_bioconda or test_double_overwrite or test_env_filtering or test_biocontainers or test_disable_file_overwrite_without_ext or test_disable_file_creation_in_outdir_with_ext or test_write_write_conflict or test_directory_literal_with_real_inputs_inside or test_revsort_workflow or test_stdin_with_id_preset)' --ignore-glob '*test_udocker.py' -n auto -v -rs --pyargs cwltool"
+	"apk add gcc bash && pip install -r/tmp/cwltool/test-requirements.txt ; pytest -k 'not (test_bioconda or test_double_overwrite or test_env_filtering or test_biocontainers or test_disable_file_overwrite_without_ext or test_disable_file_creation_in_outdir_with_ext or test_write_write_conflict or test_directory_literal_with_real_inputs_inside or test_revsort_workflow or test_stdin_with_id_preset or test_no_compute_chcksum or test_packed_workflow_execution[tests/wf/count-lines1-wf.cwl-tests/wf/wc-job.json-False] or test_sequential_workflow or test_single_process_subwf_subwf_inline_step)' --ignore-glob '*test_udocker.py' -n 0 -v -rs --pyargs cwltool"