3.1.20220204090313

What's Changed

New feature

• real time logging by @kannon92 in #1600

Misc

• Handle URLs for command line inputs by @tetron in #1613

New Contributors

• @kannon92 made their first contribution in #1600

Full Changelog: 3.1.20220202173120...3.1.20220204090313

3.1.20220202173120

What's Changed

• add missing @needs_docker to a test by @mr-c in #1612

Full Changelog: 3.1.20220202110738...3.1.20220202173120

3.1.20220202110738

What's Changed

• Process generator docs by @tetron in #1599
• fix --single-step step2_tool error by @huzech in #1597
• pin Black to (20)22 & reformat using the new stable release by @mr-c in #1606
• --validate works with $graph docs lacking a "main" by @mr-c in #1605
• --single-step can not get default value in step by @huzech in #1598
• coverage: unify source by @mr-c in #1609
• Single-step: inline and deeply nested sub-workflows by @mr-c in #1608
• more expr parsing tests by @mr-c in #1507

Full Changelog: 3.1.20220124184855...3.1.20220202110738

3.1.20220124184855

What's Changed

• "when" expressions get an empty "self" variable by @mr-c in #1601
• single-process: handle step-level req collisions by @mr-c in #1603

Full Changelog: 3.1.20220119140128...3.1.20220124184855

3.1.20220119140128

What's Changed

• docker: enforce cores ResourceRequirement if requested by @huzech in #1594
• test_bad_stdout_expr_error needs docker by @mr-c in #1596

New Contributors

• @huzech made their first contribution in #1594

Full Changelog: 3.1.20220117131913...3.1.20220119140128

3.1.20220117131913

What's Changed

• Drop Python 3.6 by @mr-c in #1593
• adjustment for docker build by @mr-c in #1595

Full Changelog: 3.1.20220116183622...3.1.20220117131913

3.1.20220116183622

New Features

• Initial support CUDARequirement extension by @tetron in #1581
• allow additional pathname characters in strict mode by @mr-c in #1579
• _terminate_processes for non-docker processes, like nodejs by @mr-c in #1577
• Add helpful error message when a program is terminated by a (Unix) signal, such as a segfault by @gmloose in #1569

Bug fixes

• expand stdin shortcut even when an ID is preset by @mr-c in #1592
• Fix --print-targets to pass inherited reqs. by @mr-c in #1580
• Protect ruamel from blank comment strings when making templates by @leipzig in #1390

What's Changed

• WSL2 clarification by @mr-c in #1567
• remove unnecessary encodes by @mr-c in #1575
• add better string representation for Process objects by @mr-c in #1571
• Remove noisy exception when the monitored process exits quickly by @mr-c in #1584
• Update how to setup pip environment by @manabuishii in #1017
• remove an Any type hint by @mr-c in #1587
• GA: simplify pip caching by @mr-c in #1589

Dependency updates

• Bump mypy from 0.910 to 0.920 by @dependabot in #1574
• Update rdflib requirement from <6.1,>=4.2.2 to >=4.2.2,<6.2 by @dependabot in #1576
• Bump mypy from 0.920 to 0.921 by @dependabot in #1578
• Bump mypy from 0.921 to 0.930 by @dependabot in #1582
• Update ruamel-yaml requirement from <0.17.18,>=0.15 to >=0.15,<0.17.20 by @dependabot in #1583
• Update ruamel-yaml requirement from <0.17.20,>=0.15 to >=0.15,<0.17.21 by @dependabot in #1585
• Bump mypy from 0.930 to 0.931 by @dependabot in #1588

New Contributors

• @gmloose made their first contribution in #1569
• @manabuishii made their first contribution in #1017
• @leipzig made their first contribution in #1390

Full Changelog: 3.1.20211107152837...3.1.20220116183622

3.1.20211107152837

What's Changed

• --print-targets: support embedded step processess by @mr-c in #1564
• --print-input-deps: support secondaryFile resolution by @mr-c in #1565

Misc

• Update README by @ALuesink in #1561
• Update ruamel-yaml requirement from <0.17.17,>=0.15 to >=0.15,<0.17.18 by @dependabot in #1559
• cwltool.Dockerfile: only install one version of pyparsing by @mr-c in #1562

New Contributors

• @ALuesink made their first contribution in #1561

Full Changelog: 3.1.20211104071347...3.1.20211107152837

3.1.20211104071347

What's Changed

• Call fsaccess.realpath before comparing paths in _relocate. by @tetron in #1560
  (Also bumps minimum schema-salad version to 8.2.20211104054942)

Full Changelog: 3.1.20211103193132...3.1.20211104071347

3.1.20211103193132

What's Changed

• Bump eWaterCycle/setup-singularity from 6 to 7 by @dependabot in #1554
• skip pyparsing 3.x to fix pydot; rdflib's sparql parsing by @mr-c in #1557
• detect circular workflow dependencies by @lijiayong in #1543
• --single-process inherit reqs & hints; support sub-workflows by @mr-c in #1558

Full Changelog: 3.1.20211020155521...3.1.20211103193132