Output of non-annotated reads

[genericname2]

Hey,

Is there a flag to get an output (bam) file for all the reads that weren't annotated using the prebuilt databases?

Thanks a lot!

[cougarlj]

Dear genericame2,

In default, COMPSRA will output the unmapped reads. If you set "-armun", the bam file will be removed to save storage.

Best Wishes,
Jiang