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Remove some debugging stuff
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pangolin/scripts/pangolearn.py

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@@ -13,8 +13,6 @@
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import argparse
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import os
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import json, sys
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def parse_args():
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parser = argparse.ArgumentParser(description='pangoLEARN.')
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parser.add_argument("--header-file", action="store", type=str, dest="header_file")
@@ -113,8 +111,6 @@ def readInAndFormatData(sequencesFile, indiciesToKeep, blockSize=1000):
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# loading the list of headers the model needs.
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model_headers = joblib.load(args.header_file)
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indiciesToKeep = model_headers[1:]
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with open("/tmp/model_headers.csv", "w") as f:
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print("\n".join(map(str,indiciesToKeep)), file=f)
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referenceSeq = findReferenceSeq()
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# possible nucleotide symbols

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