Skip to content

Commit b16a299

Browse files
Add entries for pangolin-data/-assignment 1.35 and constrain usher to <=0.6.5 (#561)
* Add entries for pangolin-data/-assignment 1.35 * Constrain usher version to be 0.6.5 or lower because bioconda version 0.6.6 seems broken (lineage A assigned to all sequences).
1 parent 23f72d0 commit b16a299

File tree

2 files changed

+3
-1
lines changed

2 files changed

+3
-1
lines changed

environment.yml

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -11,7 +11,7 @@ dependencies:
1111
- snakemake-minimal=7.24.0
1212
- gofasta
1313
- ucsc-fatovcf>=426
14-
- usher>=0.5.4
14+
- usher>=0.5.4,<=0.6.5
1515
- git-lfs
1616
- pip:
1717
- git+https://github.com/cov-lineages/pangolin-data.git

pangolin/data/data_compatibility.csv

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,5 @@
11
data_source,version,min_pangolin_version,min_scorpio_version
2+
pangolin-data,1.35,4.3,
23
pangolin-data,1.34,4.3,
34
pangolin-data,1.33,4.3,
45
pangolin-data,1.32,4.3,
@@ -33,6 +34,7 @@ pangolin-data,1.6,4,
3334
pangolin-data,1.3,4,
3435
pangolin-data,1.2.133,4,
3536
pangolin-data,1.2.127,4,
37+
pangolin-assignment,1.35,4.3,
3638
pangolin-assignment,1.34,4.3,
3739
pangolin-assignment,1.33,4.3,
3840
pangolin-assignment,1.32,4.3,

0 commit comments

Comments
 (0)