diff --git a/.github/workflows/pangolin.yml b/.github/workflows/pangolin.yml index c27ad6d..6ef6bae 100644 --- a/.github/workflows/pangolin.yml +++ b/.github/workflows/pangolin.yml @@ -1,6 +1,8 @@ name: pangolin - on: [push, pull_request] +defaults: + run: + shell: bash -l {0} jobs: run_pangolin_test: @@ -18,12 +20,9 @@ jobs: channels: conda-forge,bioconda,defaults mamba-version: "*" - name: Install pangolin - shell: bash -l {0} run: pip install -e . - name: Check pangolin version - shell: bash -l {0} run: pangolin --version - name: Run pangolin with test data - shell: bash -l {0} run: pangolin pangolin/test/test_seqs.fasta 2>&1 | tee pangolin.log -# add more tests here \ No newline at end of file +# add more tests here