If you find cellfinder useful, and use it in your research, please cite the code repository:
Adam L. Tyson, Charly V. Rousseau, Christian J. Niedworok and Troy W. Margrie (2020). cellfinder: automated 3D cell detection and registration of whole-brain images. doi:10.5281/zenodo.3665329
If you use the image registration parts of cellfinder (amap), please cite the original Nature Communications paper along with the repository:
Adam L. Tyson, Charly V. Rousseau, Christian J. Niedworok and Troy W. Margrie (2019). amap: automatic atlas propagation. doi:10.5281/zenodo.3582162
Please also "star" the GitHub repositories (cellfinder & amap) as this helps more people find the software.