Skip to content

Latest commit

 

History

History
26 lines (15 loc) · 751 Bytes

rescale-xml.md

File metadata and controls

26 lines (15 loc) · 751 Bytes

Rescale xml file

To rescale the cell positions within an XML file. For compatibility with other software, or if your data has been scaled after cell detection.

    cellfinder_xml_scale /path/to.xml -x x_scale -y y_scale -z z_scale

Arguments

Run cellfinder_xml_scale -h to see all options.

Optional arguments

Scales

If not set, will default to 1 (i.e. no scaling). Can be any float (e.g. 0.5 or 2)

  • -x or --x-scale Rescaling factor in the first dimension
  • -y or --y-scale Rescaling factor in the second dimension
  • -z or --z-scale Rescaling factor in the third dimension

Others

  • -o or --output Output directory for the scaled xml file. Defaults to the same directory as the input file.