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00_Rename_VTSintermediates.sh
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#!/bin/bash
# See https://github.com/vastgroup/vast-tools
rename "B_1_12474_GCCAAT_read1" "B_Bcells_1" vast_out/to_combine/*
rename "B_2_12475_ACAGTG_read1" "B_Bcells_2" vast_out/to_combine/*
rename "Ba_1_12476_CTTGTA_read1" "B_Bpulse_1" vast_out/to_combine/*
rename "Ba_2_12477_GTGAAA_read1" "B_Bpulse_2" vast_out/to_combine/*
rename "D2_1_12478_TGACCA_read1" "B_Day2_1" vast_out/to_combine/*
rename "D2_2_12479_CAGATC_read1" "B_Day2_2" vast_out/to_combine/*
rename "D4_1_12480_ACTTGA_read1" "B_Day4_1" vast_out/to_combine/*
rename "D4_2_12481_GGCTAC_read1" "B_Day4_2" vast_out/to_combine/*
rename "D6_1_12482_ACTGAT_read1" "B_Day6_1" vast_out/to_combine/*
rename "D6_2_12483_AGTCAA_read1" "B_Day6_2" vast_out/to_combine/*
rename "D8_1_12484_GTCCGC_read1" "B_Day8_1" vast_out/to_combine/*
rename "D8_2_12485_GAGTGG_read1" "B_Day8_2" vast_out/to_combine/*
rename "iPS_1_12486_CGATGT_read1" "B_iPS_1" vast_out/to_combine/*
rename "iPS_2_12487_ATCACG_read1" "B_iPS_2" vast_out/to_combine/*
rename "ES_1_12488_GATCAG_read1" "B_ES_1" vast_out/to_combine/*
rename "ES_2_12489_TAGCTT_read1" "B_ES_2" vast_out/to_combine/*
rename "Day0_rep1_SRR2070947_1" "M_Day0_1" vast_out/to_combine/*
rename "Day0_rep2_SRR2070948_1" "M_Day0_2" vast_out/to_combine/*
rename "Day0_rep3_SRR2070949_1" "M_Day0_3" vast_out/to_combine/*
rename "Day4_rep1_SRR2070950_1" "M_Day4_1" vast_out/to_combine/*
rename "Day4_rep2_SRR2070951_1" "M_Day4_2" vast_out/to_combine/*
rename "Day4_rep3_SRR2070952_1" "M_Day4_3" vast_out/to_combine/*
rename "Day7_rep1_SRR2070953_1" "M_Day7_1" vast_out/to_combine/*
rename "Day7_rep2_SRR2070954_1" "M_Day7_2" vast_out/to_combine/*
rename "Day7_rep3_SRR2070955_1" "M_Day7_3" vast_out/to_combine/*
rename "Day10_rep1_SRR2070956_1" "M_Day10_1" vast_out/to_combine/*
rename "Day10_rep2_SRR2070957_1" "M_Day10_2" vast_out/to_combine/*
rename "Day10_rep3_SRR2070958_1" "M_Day10_3" vast_out/to_combine/*
rename "Day15_rep1_SRR2070959_1" "M_Day15_1" vast_out/to_combine/*
rename "Day15_rep2_SRR2070960_1" "M_Day15_2" vast_out/to_combine/*
rename "Day15_rep3_SRR2070961_1" "M_Day15_3" vast_out/to_combine/*
rename "Day20_rep1_SRR2070962_1" "M_Day20_1" vast_out/to_combine/*
rename "Day20_rep2_SRR2070963_1" "M_Day20_2" vast_out/to_combine/*
rename "Day20_rep3_SRR2070964_1" "M_Day20_3" vast_out/to_combine/*
rename "Clone_rep1_SRR2070965_1" "M_Clone_1" vast_out/to_combine/*
rename "Clone_rep2_SRR2070966_1" "M_Clone_2" vast_out/to_combine/*
rename "Clone_rep3_SRR2070967_1" "M_Clone_3" vast_out/to_combine/*