installation problem

[daisyranc]

Thank you for your nice code! However, I met an installation problem, so that I cannot use your code. Could you help me to check how to fix this problem?

I use Ubuntu16.04, Pytorch 1.1, GCC 5.5, CUDA 9.0. Should I change GCC version?
Here's the installation log:

running install
running bdist_egg
running egg_info
writing emd_ext.egg-info/PKG-INFO
writing dependency_links to emd_ext.egg-info/dependency_links.txt
writing top-level names to emd_ext.egg-info/top_level.txt
reading manifest file 'emd_ext.egg-info/SOURCES.txt'
writing manifest file 'emd_ext.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_ext
building 'emd_cuda' extension
creating build
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/cuda
gcc -pthread -B /home/pm/anaconda3/envs/PyTorchEMD/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include -I/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/torch/csrc/api/include -I/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/TH -I/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/THC -I/usr/local/cuda-9.0/include -I/home/pm/anaconda3/envs/PyTorchEMD/include/python3.6m -c cuda/emd.cpp -o build/temp.linux-x86_64-3.6/cuda/emd.o -g -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=emd_cuda -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
/usr/local/cuda-9.0/bin/nvcc -I/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include -I/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/torch/csrc/api/include -I/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/TH -I/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/THC -I/usr/local/cuda-9.0/include -I/home/pm/anaconda3/envs/PyTorchEMD/include/python3.6m -c cuda/emd_kernel.cu -o build/temp.linux-x86_64-3.6/cuda/emd_kernel.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --compiler-options '-fPIC' -O2 -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=emd_cuda -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11
/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9220): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9231): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9244): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9255): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9268): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9279): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9292): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9303): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9316): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9327): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9340): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9352): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9365): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9376): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9389): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9401): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9410): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9419): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9428): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9437): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9445): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9454): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9463): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9472): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9481): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9490): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9499): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9508): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9517): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9526): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9535): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9544): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(55): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(63): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(73): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(81): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(91): error: argument of type "void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(100): error: argument of type "void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(109): error: argument of type "void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(117): error: argument of type "void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(127): error: argument of type "void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(136): error: argument of type "void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(145): error: argument of type "void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512pfintrin.h(153): error: argument of type "void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10799): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10811): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10823): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10835): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10847): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10859): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10871): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10883): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10895): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10907): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10919): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10931): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10943): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10955): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10967): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10979): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(10989): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11000): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11009): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11020): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11029): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11040): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11049): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11060): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11069): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11080): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11089): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11100): error: argument of type "void *" is incompatible with parameter of type "float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11109): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11120): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11129): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11140): error: argument of type "void *" is incompatible with parameter of type "double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11149): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11160): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11169): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11180): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11189): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11200): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11209): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11220): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11229): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11240): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11249): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11260): error: argument of type "void *" is incompatible with parameter of type "int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11269): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11280): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11289): error: argument of type "void *" is incompatible with parameter of type "long long *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512vlintrin.h(11300): error: argument of type "void *" is incompatible with parameter of type "long long *"

/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/ATen/cuda/NumericLimits.cuh(83): warning: calling a constexpr host function("from_bits") from a host device function("lowest") is not allowed. The experimental flag '--expt-relaxed-constexpr' can be used to allow this.

/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/ATen/cuda/NumericLimits.cuh(84): warning: calling a constexpr host function("from_bits") from a host device function("max") is not allowed. The experimental flag '--expt-relaxed-constexpr' can be used to allow this.

/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/ATen/cuda/NumericLimits.cuh(85): warning: calling a constexpr host function("from_bits") from a host device function("lower_bound") is not allowed. The experimental flag '--expt-relaxed-constexpr' can be used to allow this.

/home/pm/anaconda3/envs/PyTorchEMD/lib/python3.6/site-packages/torch/include/ATen/cuda/NumericLimits.cuh(86): warning: calling a constexpr host function("from_bits") from a host device function("upper_bound") is not allowed. The experimental flag '--expt-relaxed-constexpr' can be used to allow this.

92 errors detected in the compilation of "/tmp/tmpxft_0000464e_00000000-6_emd_kernel.cpp1.ii".
error: command '/usr/local/cuda-9.0/bin/nvcc' failed with exit status 1