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DESCRIPTION
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Type: Package
Package: rtestim
Title: Estimate the Effective Reproductive Number with Trend Filtering
Version: 0.0.5
Authors@R: c(
person("Daniel J.", "McDonald", , "[email protected]", role = c("aut", "cre")),
person("Jiaping", "Liu", , "[email protected]", role = "aut"),
person("Zhenglun", "Cai", , "[email protected]", role = "aut")
)
Description: Estimate the instantaneous reproduction number, Rt, with Poisson
likelihood and a trend filtering penalty (a type of regularized
nonparametric regression). This value roughly says "how
many new infections will result from each new infection today".
Values larger than 1 indicate that an epidemic is growing while those
less than 1 indicate decline.
License: MIT + file LICENSE
URL: https://github.com/dajmcdon/rtestim,
https://dajmcdon.github.io/rtestim/
BugReports: https://github.com/dajmcdon/rtestim/issues
Depends:
R (>= 3.6.2)
Imports:
checkmate,
cli,
dspline,
ggplot2,
magrittr,
Matrix,
methods,
Rcpp,
rlang,
tibble,
vctrs
Suggests:
dplyr,
forcats,
knitr,
nnet,
rmarkdown,
testthat (>= 3.0.0),
tidyr,
xml2
LinkingTo:
BH,
dspline,
Rcpp,
RcppEigen,
testthat
VignetteBuilder:
knitr
Remotes:
glmgen/dspline
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2